RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TPRNQ4KMQ1 711 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 LPIN2Q92539 896 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 MYO5AQ9Y4I1 1855 aaKnown RBP17.73■□□□□ 0.43
LDLR-202ENST00000455727 LIG1P18858 919 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 CCDC102BQ68D86 513 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 MB21D2Q8IYB1 491 aaPredicted RBP17.72■□□□□ 0.43
LDLR-202ENST00000455727 NUP62CLQ9H1M0 184 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 DDX19AQ9NUU7 478 aaKnown RBP17.72■□□□□ 0.43
LDLR-202ENST00000455727 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.72■□□□□ 0.43
LDLR-202ENST00000455727 ZNF213O14771 459 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 MAP3K11Q16584 847 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 NCOA7Q8NI08 942 aa17.72■□□□□ 0.43
LDLR-202ENST00000455727 PHLPP1O60346 1717 aa17.71■□□□□ 0.43
LDLR-202ENST00000455727 CCT2P78371 535 aaKnown RBP17.71■□□□□ 0.43
LDLR-202ENST00000455727 PARP10Q53GL7 1025 aa17.71■□□□□ 0.43
LDLR-202ENST00000455727 SLC9C2Q5TAH2 1124 aa17.71■□□□□ 0.43
LDLR-202ENST00000455727 ADD1P35611 737 aaKnown RBP17.71■□□□□ 0.43
LDLR-202ENST00000455727 SUSD4Q5VX71 490 aa17.71■□□□□ 0.43
LDLR-202ENST00000455727 RBM43Q6ZSC3 357 aaKnown RBP17.71■□□□□ 0.43
LDLR-202ENST00000455727 CHST3Q7LGC8 479 aa17.71■□□□□ 0.43
LDLR-202ENST00000455727 DHX16O60231 1041 aaKnown RBP17.7■□□□□ 0.42
LDLR-202ENST00000455727 KDM4AO75164 1064 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 ATP6V1AP38606 617 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 CRKLP46109 303 aaKnown RBP17.7■□□□□ 0.42
LDLR-202ENST00000455727 PGBD1Q96JS3 809 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 UTP14AQ9BVJ6 771 aaKnown RBP17.7■□□□□ 0.42
LDLR-202ENST00000455727 PIH1D3Q9NQM4 214 aaKnown RBP17.7■□□□□ 0.42
LDLR-202ENST00000455727 RCOR1Q9UKL0 485 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 RTL9Q8NET4 1388 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 LAMB2P55268 1798 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 LOC102724428A0A0B4J2F2 783 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 PRC1O43663 620 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 PHKA1P46020 1223 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 SIK1P57059 783 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 HAND2P61296 217 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 NCOA5Q9HCD5 579 aaKnown RBP17.7■□□□□ 0.42
LDLR-202ENST00000455727 DACT1Q9NYF0 836 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 DOCK2Q92608 1830 aa17.7■□□□□ 0.42
LDLR-202ENST00000455727 MYH14Q7Z406 1995 aaKnown RBP17.69■□□□□ 0.42
LDLR-202ENST00000455727 CAMTA2O94983 1202 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 RALYLQ86SE5 291 aaKnown RBP17.69■□□□□ 0.42
LDLR-202ENST00000455727 MARCH10Q8NA82 808 aaPredicted RBP17.69■□□□□ 0.42
LDLR-202ENST00000455727 RGS22Q8NE09 1264 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 CARMIL3Q8ND23 1372 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 SLC5A1P13866 664 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 TNMDQ9H2S6 317 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 CLSTN2Q9H4D0 955 aa17.69■□□□□ 0.42
LDLR-202ENST00000455727 SPATA31A5Q5VU36 1347 aa17.68■□□□□ 0.42
LDLR-202ENST00000455727 SPATA31A7Q8IWB4 1347 aa17.68■□□□□ 0.42
LDLR-202ENST00000455727 TCRBV5S4A2TA0A5A2 114 aa17.68■□□□□ 0.42
LDLR-202ENST00000455727 BARGINQ6ZT62 677 aa17.68■□□□□ 0.42
LDLR-202ENST00000455727 ZNF396Q96N95 335 aaPredicted RBP17.68■□□□□ 0.42
LDLR-202ENST00000455727 USP25Q9UHP3 1055 aa17.68■□□□□ 0.42
LDLR-202ENST00000455727 NAP1L2Q9ULW6 460 aaPredicted RBP17.68■□□□□ 0.42
LDLR-202ENST00000455727 OFD1O75665 1012 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ADAMTS2O95450 1211 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 FDPSP14324 419 aaKnown RBP17.67■□□□□ 0.42
LDLR-202ENST00000455727 PDE6AP16499 860 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ANTXR2P58335 489 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ALX1Q15699 326 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ZNF831Q5JPB2 1677 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ZMYM6O95789 1325 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 ZNF532Q9HCE3 1301 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 IDH1O75874 414 aaKnown RBP17.67■□□□□ 0.42
LDLR-202ENST00000455727 ADCY5O95622 1261 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 TRDNQ13061 729 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 MPHOSPH8Q99549 860 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 LTBP4Q8N2S1 1624 aa17.67■□□□□ 0.42
LDLR-202ENST00000455727 CCDC152Q4G0S7 254 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 SPATA5Q8NB90 893 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 BICD2Q8TD16 824 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 HPS5Q9UPZ3 1129 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 KLF18A0A0U1RQI7 1052 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 PTMAP06454 111 aaKnown RBP17.66■□□□□ 0.42
LDLR-202ENST00000455727 TYRO3Q06418 890 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 ITPK1Q13572 414 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 FAM200AQ8TCP9 573 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 SMARCC1Q92922 1105 aaPredicted RBP17.66■□□□□ 0.42
LDLR-202ENST00000455727 NAP1L5Q96NT1 182 aaPredicted RBP17.66■□□□□ 0.42
LDLR-202ENST00000455727 NBPF3Q9H094 633 aa17.66■□□□□ 0.42
LDLR-202ENST00000455727 GPHNQ9NQX3 736 aaPredicted RBP17.66■□□□□ 0.42
LDLR-202ENST00000455727 NR1I2O75469 434 aa17.65■□□□□ 0.42
LDLR-202ENST00000455727 HELBQ8NG08 1087 aaPredicted RBP17.65■□□□□ 0.42
LDLR-202ENST00000455727 ACSBG1Q96GR2 724 aa17.65■□□□□ 0.42
LDLR-202ENST00000455727 STRBPQ96SI9 672 aaKnown RBP17.65■□□□□ 0.42
LDLR-202ENST00000455727 MRVI1Q9Y6F6 885 aa17.65■□□□□ 0.42
LDLR-202ENST00000455727 COL5A3P25940 1745 aaPredicted RBP17.65■□□□□ 0.42
LDLR-202ENST00000455727 NTSR2O95665 410 aa17.65■□□□□ 0.42
LDLR-202ENST00000455727 CAMK4Q16566 473 aa17.65■□□□□ 0.42
LDLR-202ENST00000455727 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.65■□□□□ 0.42
LDLR-202ENST00000455727 BCORQ6W2J9 1755 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 MAP3K12Q12852 859 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 WWC3Q9ULE0 1092 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 C4AP0C0L4 1744 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 C4BP0C0L5 1744 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 GOLGA8BA8MQT2 603 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 AIDAQ96BJ3 306 aa17.64■□□□□ 0.41
LDLR-202ENST00000455727 ANGEL1Q9UNK9 670 aaKnown RBP17.64■□□□□ 0.41
LDLR-202ENST00000455727 NIP7Q9Y221 180 aaKnown RBP eCLIP17.64■□□□□ 0.41
LDLR-202ENST00000455727 CAVIN2O95810 425 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms