RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 CHADLQ6NUI6 762 aa17.75■□□□□ 0.43
COL3A1-203ENST00000450867 CERS5Q8N5B7 392 aa17.75■□□□□ 0.43
COL3A1-203ENST00000450867 COL1A1P02452 1464 aaPredicted RBP17.75■□□□□ 0.43
COL3A1-203ENST00000450867 SEMA3EO15041 775 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 USP17L8P0C7I0 530 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 HIRAP54198 1017 aaPredicted RBP17.74■□□□□ 0.43
COL3A1-203ENST00000450867 HSP90AB4PQ58FF6 505 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 VPS37DQ86XT2 251 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 ERC1Q8IUD2 1116 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 TRPM4Q8TD43 1214 aa17.74■□□□□ 0.43
COL3A1-203ENST00000450867 ZC3H15Q8WU90 426 aaKnown RBP17.74■□□□□ 0.43
COL3A1-203ENST00000450867 PDS5AQ29RF7 1337 aaKnown RBP17.73■□□□□ 0.43
COL3A1-203ENST00000450867 ADORA1P30542 326 aa17.73■□□□□ 0.43
COL3A1-203ENST00000450867 TIMM10P62072 90 aa17.73■□□□□ 0.43
COL3A1-203ENST00000450867 CRBNQ96SW2 442 aa17.73■□□□□ 0.43
COL3A1-203ENST00000450867 MXD3Q9BW11 206 aa17.73■□□□□ 0.43
COL3A1-203ENST00000450867 EGFRP00533 1210 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 PHKA1P46020 1223 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 OS9Q13438 667 aaPredicted RBP17.72■□□□□ 0.43
COL3A1-203ENST00000450867 EAPPQ56P03 285 aaPredicted RBP17.72■□□□□ 0.43
COL3A1-203ENST00000450867 TNNI3KQ59H18 835 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 CCDC102BQ68D86 513 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 TBC1D22AQ8WUA7 517 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 XAGE2Q96GT9 111 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 GNL3LQ9NVN8 582 aaKnown RBP17.72■□□□□ 0.43
COL3A1-203ENST00000450867 EXOC6BQ9Y2D4 811 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 FPGT-TNNI3KV9GXZ4 949 aa17.72■□□□□ 0.43
COL3A1-203ENST00000450867 SAMD7Q7Z3H4 446 aa17.71■□□□□ 0.43
COL3A1-203ENST00000450867 FBXW7Q969H0 707 aa17.71■□□□□ 0.43
COL3A1-203ENST00000450867 ZBED3Q96IU2 234 aaPredicted RBP17.71■□□□□ 0.43
COL3A1-203ENST00000450867 MYOZ2Q9NPC6 264 aa17.71■□□□□ 0.43
COL3A1-203ENST00000450867 SALL1Q9NSC2 1324 aa17.71■□□□□ 0.42
COL3A1-203ENST00000450867 RAB11FIP3O75154 756 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 ITGBL1O95965 494 aaPredicted RBP17.7■□□□□ 0.42
COL3A1-203ENST00000450867 KIF4BQ2VIQ3 1234 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 TBC1D10BQ4KMP7 808 aaPredicted RBP17.7■□□□□ 0.42
COL3A1-203ENST00000450867 MFSD14BQ5SR56 506 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 OGFOD1Q8N543 542 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 MTMR14Q8NCE2 650 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 IQSEC3Q9UPP2 1182 aaPredicted RBP17.7■□□□□ 0.42
COL3A1-203ENST00000450867 SUGT1Q9Y2Z0 365 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 SUPT16HQ9Y5B9 1047 aaKnown RBP17.7■□□□□ 0.42
COL3A1-203ENST00000450867 PCDHB15Q9Y5E8 787 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 PASKQ96RG2 1323 aa17.7■□□□□ 0.42
COL3A1-203ENST00000450867 ARID4AP29374 1257 aaPredicted RBP17.69■□□□□ 0.42
COL3A1-203ENST00000450867 KIAA0825Q8IV33 1275 aa17.69■□□□□ 0.42
COL3A1-203ENST00000450867 WDR66Q8TBY9 1149 aa17.69■□□□□ 0.42
COL3A1-203ENST00000450867 RHPN1Q8TCX5 695 aa17.69■□□□□ 0.42
COL3A1-203ENST00000450867 KIF1BPQ96EK5 621 aa17.69■□□□□ 0.42
COL3A1-203ENST00000450867 DENND2AQ9ULE3 1009 aa17.69■□□□□ 0.42
COL3A1-203ENST00000450867 FRAT2O75474 233 aaPredicted RBP17.68■□□□□ 0.42
COL3A1-203ENST00000450867 RASGRF1Q13972 1273 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 EAF2Q96CJ1 260 aaPredicted RBP17.68■□□□□ 0.42
COL3A1-203ENST00000450867 ZNF512BQ96KM6 892 aaPredicted RBP17.68■□□□□ 0.42
COL3A1-203ENST00000450867 NEUROD6Q96NK8 337 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 DCTPP1Q9H773 170 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 HDAC9Q9UKV0 1011 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 JAG2Q9Y219 1238 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 CLEC11AQ9Y240 323 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 MYO5AQ9Y4I1 1855 aaKnown RBP17.68■□□□□ 0.42
COL3A1-203ENST00000450867 MYH2Q9UKX2 1941 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 PITPNM2Q9BZ72 1349 aa17.68■□□□□ 0.42
COL3A1-203ENST00000450867 MAST2Q6P0Q8 1798 aa17.67■□□□□ 0.42
COL3A1-203ENST00000450867 HSPA6P17066 643 aa17.67■□□□□ 0.42
COL3A1-203ENST00000450867 HDLBPQ00341 1268 aaKnown RBP17.67■□□□□ 0.42
COL3A1-203ENST00000450867 MAP1SQ66K74 1059 aaPredicted RBP17.67■□□□□ 0.42
COL3A1-203ENST00000450867 CNTROBQ8N137 903 aa17.67■□□□□ 0.42
COL3A1-203ENST00000450867 MRIQ9BWK5 157 aa17.67■□□□□ 0.42
COL3A1-203ENST00000450867 DBNLQ9UJU6 430 aaKnown RBP17.67■□□□□ 0.42
COL3A1-203ENST00000450867 DOCK2Q92608 1830 aa17.67■□□□□ 0.42
COL3A1-203ENST00000450867 WNT10BO00744 389 aa17.66■□□□□ 0.42
COL3A1-203ENST00000450867 UQCRFS1P1P0C7P4 283 aa17.66■□□□□ 0.42
COL3A1-203ENST00000450867 CHAF1AQ13111 956 aaPredicted RBP17.66■□□□□ 0.42
COL3A1-203ENST00000450867 DBNDD2Q9BQY9 259 aa17.66■□□□□ 0.42
COL3A1-203ENST00000450867 SERPINA10Q9UK55 444 aa17.66■□□□□ 0.42
COL3A1-203ENST00000450867 GRIK5Q16478 980 aa17.65■□□□□ 0.42
COL3A1-203ENST00000450867 MAST3O60307 1309 aa17.65■□□□□ 0.42
COL3A1-203ENST00000450867 HDAC1Q13547 482 aaPredicted RBP17.64■□□□□ 0.41
COL3A1-203ENST00000450867 SCARF1Q14162 830 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 NBPF9Q3BBW0 867 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 GORABQ5T7V8 394 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 RBM26Q5T8P6 1007 aaKnown RBP17.64■□□□□ 0.41
COL3A1-203ENST00000450867 CDC37L1Q7L3B6 337 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 TLR7Q9NYK1 1049 aaKnown RBP17.64■□□□□ 0.41
COL3A1-203ENST00000450867 GGA3Q9NZ52 723 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 HMG20BQ9P0W2 317 aa17.64■□□□□ 0.41
COL3A1-203ENST00000450867 TTF2Q9UNY4 1162 aaKnown RBP17.64■□□□□ 0.41
COL3A1-203ENST00000450867 CEP350Q5VT06 3117 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 SPDYE2BA6NHP3 402 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 SPDYE6P0CI01 402 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 MCAMP43121 646 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 APLP1P51693 650 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 CFAP100Q494V2 611 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 CCDC158Q5M9N0 1113 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 CLASRPQ8N2M8 674 aaKnown RBP17.63■□□□□ 0.41
COL3A1-203ENST00000450867 ZGPATQ8N5A5 531 aaKnown RBP17.63■□□□□ 0.41
COL3A1-203ENST00000450867 SPATA5Q8NB90 893 aa17.63■□□□□ 0.41
COL3A1-203ENST00000450867 ASTN2O75129 1339 aaPredicted RBP17.63■□□□□ 0.41
COL3A1-203ENST00000450867 F8W031 263 aaPredicted RBP17.62■□□□□ 0.41
COL3A1-203ENST00000450867 DLGAP5Q15398 846 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms