RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 DENND2AQ9ULE3 1009 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 DOCK2Q92608 1830 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 RPAP1Q9BWH6 1393 aaPredicted RBP17.05■□□□□ 0.32
USP39-207ENST00000450066 IRS2Q9Y4H2 1338 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 TCRBV5S4A2TA0A5A2 114 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 PSMA5P28066 241 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 HIBADHP31937 336 aaKnown RBP17.05■□□□□ 0.32
USP39-207ENST00000450066 TMC4Q7Z404 712 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 WWC3Q9ULE0 1092 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 ANKRD31Q8N7Z5 1873 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 PDS5AQ29RF7 1337 aaKnown RBP17.05■□□□□ 0.32
USP39-207ENST00000450066 ZNF532Q9HCE3 1301 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 KLRK1P26718 216 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 DDIT3P35638 169 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 PDE6BP35913 854 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 KRT32Q14532 448 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 MSL1Q68DK7 614 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 TTC14Q96N46 770 aa17.05■□□□□ 0.32
USP39-207ENST00000450066 IQSEC3Q9UPP2 1182 aaPredicted RBP17.04■□□□□ 0.32
USP39-207ENST00000450066 CYP46A1Q9Y6A2 500 aa17.04■□□□□ 0.32
USP39-207ENST00000450066 MYO5AQ9Y4I1 1855 aaKnown RBP17.04■□□□□ 0.32
USP39-207ENST00000450066 GPAA1O43292 621 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 SRGNP10124 158 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 RUFY3Q7L099 469 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 COL1A1P02452 1464 aaPredicted RBP17.03■□□□□ 0.32
USP39-207ENST00000450066 CYP21A2P08686 494 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 NPR1P16066 1061 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 C15orf52Q6ZUT6 534 aaKnown RBP17.03■□□□□ 0.32
USP39-207ENST00000450066 TMX3Q96JJ7 454 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 CHMP5Q9NZZ3 219 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 LRP2BPQ9P2M1 347 aa17.03■□□□□ 0.32
USP39-207ENST00000450066 GPSM2P81274 684 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 DEFB132Q7Z7B7 95 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 MAGEB6Q8N7X4 407 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 PODXL2Q9NZ53 605 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 CTNNA3Q9UI47 895 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 TAF6LQ9Y6J9 622 aa17.02■□□□□ 0.32
USP39-207ENST00000450066 FOXP2O15409 715 aa17.01■□□□□ 0.31
USP39-207ENST00000450066 SLC51AQ86UW1 340 aa17.01■□□□□ 0.31
USP39-207ENST00000450066 TXNRD3Q86VQ6 643 aa17.01■□□□□ 0.31
USP39-207ENST00000450066 CIZ1Q9ULV3 898 aaPredicted RBP17.01■□□□□ 0.31
USP39-207ENST00000450066 FRAT2O75474 233 aaPredicted RBP17.01■□□□□ 0.31
USP39-207ENST00000450066 ATP2B4P23634 1241 aa17.01■□□□□ 0.31
USP39-207ENST00000450066 PDRG1Q9NUG6 133 aa17.01■□□□□ 0.31
USP39-207ENST00000450066 NSFL1CQ9UNZ2 370 aaKnown RBP17.01■□□□□ 0.31
USP39-207ENST00000450066 CPA1P15085 419 aa17■□□□□ 0.31
USP39-207ENST00000450066 ALDH1B1P30837 517 aa17■□□□□ 0.31
USP39-207ENST00000450066 AK2P54819 239 aa17■□□□□ 0.31
USP39-207ENST00000450066 BLOC1S2Q6QNY1 142 aa17■□□□□ 0.31
USP39-207ENST00000450066 SP8Q8IXZ3 490 aa17■□□□□ 0.31
USP39-207ENST00000450066 ABCF2Q9UG63 623 aa17■□□□□ 0.31
USP39-207ENST00000450066 GGA1Q9UJY5 639 aa17■□□□□ 0.31
USP39-207ENST00000450066 PPEF1O14829 653 aaPredicted RBP17■□□□□ 0.31
USP39-207ENST00000450066 CUL4AQ13619 759 aa17■□□□□ 0.31
USP39-207ENST00000450066 CCDC125Q86Z20 511 aa17■□□□□ 0.31
USP39-207ENST00000450066 AIDAQ96BJ3 306 aa17■□□□□ 0.31
USP39-207ENST00000450066 MASTLQ96GX5 879 aa17■□□□□ 0.31
USP39-207ENST00000450066 ALDH8A1Q9H2A2 487 aaPredicted RBP17■□□□□ 0.31
USP39-207ENST00000450066 ATP6V0A2Q9Y487 856 aa17■□□□□ 0.31
USP39-207ENST00000450066 LRRC37AA6NMS7 1700 aa16.99■□□□□ 0.31
USP39-207ENST00000450066 RPS6KB1P23443 525 aa16.99■□□□□ 0.31
USP39-207ENST00000450066 NEK1Q96PY6 1258 aa16.99■□□□□ 0.31
USP39-207ENST00000450066 STRBPQ96SI9 672 aaKnown RBP16.99■□□□□ 0.31
USP39-207ENST00000450066 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
USP39-207ENST00000450066 LIMCH1Q9UPQ0 1083 aa16.99■□□□□ 0.31
USP39-207ENST00000450066 UFL1O94874 794 aa16.98■□□□□ 0.31
USP39-207ENST00000450066 FGAP02671 866 aa16.98■□□□□ 0.31
USP39-207ENST00000450066 ZNF804AQ7Z570 1209 aa16.98■□□□□ 0.31
USP39-207ENST00000450066 ANP32EQ9BTT0 268 aa16.98■□□□□ 0.31
USP39-207ENST00000450066 CWC22Q9HCG8 908 aaKnown RBP16.98■□□□□ 0.31
USP39-207ENST00000450066 RAI14Q9P0K7 980 aa16.98■□□□□ 0.31
USP39-207ENST00000450066 HMGB1P09429 215 aaKnown RBP16.98■□□□□ 0.31
USP39-207ENST00000450066 INTS4Q96HW7 963 aaKnown RBP16.98■□□□□ 0.31
USP39-207ENST00000450066 IMMTQ16891 758 aaKnown RBP16.97■□□□□ 0.31
USP39-207ENST00000450066 TMED8Q6PL24 325 aaPredicted RBP16.97■□□□□ 0.31
USP39-207ENST00000450066 NOL8Q76FK4 1167 aaKnown RBP16.97■□□□□ 0.31
USP39-207ENST00000450066 TDRD7Q8NHU6 1098 aaKnown RBP16.97■□□□□ 0.31
USP39-207ENST00000450066 TBC1D16Q8TBP0 767 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 COL11A2P13942 1736 aaPredicted RBP16.97■□□□□ 0.31
USP39-207ENST00000450066 MYH13Q9UKX3 1938 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 IGSF3O75054 1194 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 MBD4O95243 580 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 ANKRD1Q15327 319 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 TTLL5Q6EMB2 1281 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 POLLQ9UGP5 575 aa16.97■□□□□ 0.31
USP39-207ENST00000450066 LTBP1Q14766 1721 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 GNAT2P19087 354 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 CYP7A1P22680 504 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 ALX1Q15699 326 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 STOX1Q6ZVD7 989 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 SALL1Q9NSC2 1324 aa16.96■□□□□ 0.31
USP39-207ENST00000450066 PATL2C9JE40 543 aaKnown RBP16.95■□□□□ 0.3
USP39-207ENST00000450066 E7EWF7 191 aa16.95■□□□□ 0.3
USP39-207ENST00000450066 H0YIN7 160 aa16.95■□□□□ 0.3
USP39-207ENST00000450066 COL9A3Q14050 684 aaPredicted RBP16.95■□□□□ 0.3
USP39-207ENST00000450066 STYK1Q6J9G0 422 aa16.95■□□□□ 0.3
USP39-207ENST00000450066 C2CD5Q86YS7 1000 aa16.95■□□□□ 0.3
USP39-207ENST00000450066 ZSCAN31Q96LW9 406 aaPredicted RBP16.95■□□□□ 0.3
USP39-207ENST00000450066 ZMYM6O95789 1325 aa16.95■□□□□ 0.3
USP39-207ENST00000450066 CACNA1SQ13698 1873 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms