RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	XAGE2	Q96GT9	111 aa		13.44	□□□□□ -0.26
RFX3-208	ENST00000449234	ANO10	Q9NW15	660 aa		13.44	□□□□□ -0.26
RFX3-208	ENST00000449234	TMOD3	Q9NYL9	352 aa		13.44	□□□□□ -0.26
RFX3-208	ENST00000449234	MAP3K15	Q6ZN16	1313 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	ERVV-1	B6SEH8	477 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	AP5Z1	O43299	807 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	NR1I2	O75469	434 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	UQCRFS1P1	P0C7P4	283 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	CLCN6	P51797	869 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	ZNF75D	P51815	510 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	FAM160A1	Q05DH4	1040 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	COL9A3	Q14050	684 aa	Predicted RBP	13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	UBE3C	Q15386	1083 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	STX1A	Q16623	288 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	FAM173B	Q6P4H8	233 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	CCAR1	Q8IX12	1150 aa	Known RBP	13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	OSBP2	Q969R2	916 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	MRFAP1L1	Q96HT8	127 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	ZBTB3	Q9H5J0	574 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	RIPOR2	Q9Y4F9	1068 aa		13.43	□□□□□ -0.26
RFX3-208	ENST00000449234	GOLGA6L19	H0YKK7	550 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	KIN	O60870	393 aa	Known RBP	13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	EVA1C	P58658	441 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	CHAF1A	Q13111	956 aa	Predicted RBP	13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	IQCB1	Q15051	598 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	TAF7L	Q5H9L4	462 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	KCNG4	Q8TDN1	519 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	MTA3	Q9BTC8	594 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	NAT10	Q9H0A0	1025 aa	Known RBP	13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	TTC12	Q9H892	705 aa	Predicted RBP	13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	SLAIN2	Q9P270	581 aa		13.42	□□□□□ -0.26
RFX3-208	ENST00000449234	ZMYM6	O95789	1325 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	LAMA4	Q16363	1823 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	ANKRD18B	A2A2Z9	1011 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234		M0R2C6	588 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	ZNF213	O14771	459 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	FGA	P02671	866 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	CAMK4	Q16566	473 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	DDX11	Q96FC9	970 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	BPIFA3	Q9BQP9	254 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	PUS3	Q9BZE2	481 aa	Known RBP	13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	TRIM5	Q9C035	493 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	POLR3E	Q9NVU0	708 aa		13.41	□□□□□ -0.26
RFX3-208	ENST00000449234	CDKL5	O76039	1030 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	RBM6	P78332	1123 aa	Known RBP	13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	PLCB2	Q00722	1185 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	TRDN	Q13061	729 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	SNW1	Q13573	536 aa	Known RBP	13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	SYCP1	Q15431	976 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	ATP2B3	Q16720	1220 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	WASHC4	Q2M389	1173 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	CPLX2	Q6PUV4	134 aa	Known RBP	13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	RALYL	Q86SE5	291 aa	Known RBP	13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	CKAP2L	Q8IYA6	745 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	FBXO18	Q8NFZ0	1043 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	ZNF594	Q96JF6	807 aa	Predicted RBP	13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	TMEM87B	Q96K49	555 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	TIGD1	Q96MW7	591 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	USP28	Q96RU2	1077 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	KCND1	Q9NSA2	647 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	NDUFB9	Q9Y6M9	179 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	CARMIL3	Q8ND23	1372 aa		13.4	□□□□□ -0.26
RFX3-208	ENST00000449234	ATRN	O75882	1429 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	PRC1	O43663	620 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	PDE8A	O60658	829 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	FDPS	P14324	419 aa	Known RBP	13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	ADD2	P35612	726 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	LUZP1	Q86V48	1076 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	NLRP10	Q86W26	655 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	LINC00301	Q8NCQ3	95 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	TTLL11	Q8NHH1	800 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	MRPS27	Q92552	414 aa	Known RBP	13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	C8orf76	Q96K31	380 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	MYH15	Q9Y2K3	1946 aa		13.39	□□□□□ -0.27
RFX3-208	ENST00000449234	MYO1B	O43795	1136 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	TUBB4A	P04350	444 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	ARID4A	P29374	1257 aa	Predicted RBP	13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	ZAP70	P43403	619 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	CCT2	P78371	535 aa	Known RBP	13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	METTL24	Q5JXM2	366 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	LDHAL6A	Q6ZMR3	332 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	SYNE3	Q6ZMZ3	975 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	CCDC186	Q7Z3E2	898 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	CEP57L1	Q8IYX8	460 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	ZNF830	Q96NB3	372 aa	Predicted RBP	13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	LRRC2	Q9BYS8	371 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	KCNF1	Q9H3M0	494 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	IMPACT	Q9P2X3	320 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	TBC1D2B	Q9UPU7	963 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	PAXBP1	Q9Y5B6	917 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	LRP6	O75581	1613 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	MROH5	Q6ZUA9	1318 aa		13.38	□□□□□ -0.27
RFX3-208	ENST00000449234	SHANK3	Q9BYB0	1731 aa		13.37	□□□□□ -0.27
RFX3-208	ENST00000449234	BECN2	A8MW95	431 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms