RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 CCDC191Q8NCU4 936 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 SH3TC2Q8TF17 1288 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 CDC5LQ99459 802 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 PHAXQ9H814 394 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 BSDC1Q9NW68 430 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 CWC25Q9NXE8 425 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 AOX1Q06278 1338 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 CLRN2A0PK11 232 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 IREB2P48200 963 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 CTSWP56202 376 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 ARHGEF6Q15052 776 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 SUPT20HL1Q3ZLR7 823 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 DUSP27Q5VZP5 1158 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 CERS5Q8N5B7 392 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 DPF3Q92784 378 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 GREM2Q9H772 168 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 PPP2R3BQ9Y5P8 575 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 ZNF804BA4D1E1 1349 aa10.07□□□□□ -0.8
LIMCH1-204ENST00000446625 TAF1CQ15572 869 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 ANKRD13AQ8IZ07 590 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 MTMR14Q8NCE2 650 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 TTLL11Q8NHH1 800 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 BRI3BPQ8WY22 251 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 OPTNQ96CV9 577 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 SHISA4Q96DD7 197 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 MS4A4AQ96JQ5 239 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 PRMT6Q96LA8 375 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 ARHGAP39Q9C0H5 1083 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 PRO3102Q9H379 93 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 ELP3Q9H9T3 547 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 VEZTQ9HBM0 779 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 ZFYVE28Q9HCC9 887 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 TRIM35Q9UPQ4 493 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 LEMD3Q9Y2U8 911 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 LAMA3Q16787 3333 aa10.06□□□□□ -0.8
LIMCH1-204ENST00000446625 METTL22Q9BUU2 404 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-204ENST00000446625 CCL15-CCL14A0A0B4J2E2 113 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 SPDYE2BA6NHP3 402 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 F8W031 263 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 MYO1BO43795 1136 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 SPDYE6P0CI01 402 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 RASA3Q14644 834 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 MTFR1Q15390 333 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 CCL15Q16663 113 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 CFAP100Q494V2 611 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 CCDC146Q8IYE0 955 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 FAM43AQ8N2R8 423 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 CD209Q9NNX6 404 aa10.04□□□□□ -0.8
LIMCH1-204ENST00000446625 SOX1O00570 391 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-204ENST00000446625 IGHMBP2P38935 993 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-204ENST00000446625 LACTBP83111 547 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-204ENST00000446625 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-204ENST00000446625 ANKRD2Q9GZV1 360 aa10.03□□□□□ -0.8
LIMCH1-204ENST00000446625 A0A1B0GUL6 1792 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 SNAP23O00161 211 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 ELL2O00472 640 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 TLR2O60603 784 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 ECM2O94769 699 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 IGKV5-2P06315 115 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 GTF2A2P52657 109 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 UBE2Q1Q7Z7E8 422 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 CDAN1Q8IWY9 1227 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 MBIPQ9NS73 344 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 MAP3K2Q9Y2U5 619 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 IRS2Q9Y4H2 1338 aa10.02□□□□□ -0.81
LIMCH1-204ENST00000446625 ZBTB7BO15156 539 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 KCNJ4P48050 445 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 MNX1P50219 401 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 RBM5P52756 815 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 MAP3K9P80192 1104 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 VGLL4Q14135 290 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 KIF22Q14807 665 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 LRCH3Q96II8 777 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 TEPSINQ96N21 525 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 HTATIP2Q9BUP3 242 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 JAG2Q9Y219 1238 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 NR2E3Q9Y5X4 410 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 ARAP2Q8WZ64 1704 aa10.01□□□□□ -0.81
LIMCH1-204ENST00000446625 DOCK3Q8IZD9 2030 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 ALPK3Q96L96 1907 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 TAF5LO75529 589 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 WDHD1O75717 1129 aaPredicted RBP10□□□□□ -0.81
LIMCH1-204ENST00000446625 DDX58O95786 925 aaKnown RBP10□□□□□ -0.81
LIMCH1-204ENST00000446625 GNRH1P01148 92 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 ITGA6P23229 1130 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 CTGFP29279 349 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 PRMT2P55345 433 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 CHRNDQ07001 517 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 CWF19L2Q2TBE0 894 aaKnown RBP10□□□□□ -0.81
LIMCH1-204ENST00000446625 SPDYE2Q495Y8 402 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 UBE3BQ7Z3V4 1068 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 NKX2-3Q8TAU0 364 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 MPHOSPH8Q99549 860 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 ZNF70Q9UC06 446 aaPredicted RBP10□□□□□ -0.81
LIMCH1-204ENST00000446625 MGAMO43451 1857 aa10□□□□□ -0.81
LIMCH1-204ENST00000446625 A0A1W2PPC1 479 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 PI4KAP2A4QPH2 592 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 BTBD19C9JJ37 291 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 H7C1W4 665 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 GJB1P08034 283 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms