RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 SMC1AQ14683 1233 aaKnown RBP9.71□□□□□ -0.85
PTPN3-204ENST00000446349 PTPN14Q15678 1187 aa9.71□□□□□ -0.85
PTPN3-204ENST00000446349 DYDC1Q8WWB3 177 aa9.71□□□□□ -0.85
PTPN3-204ENST00000446349 BIN2Q9UBW5 565 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-204ENST00000446349 IBTKQ9P2D0 1353 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-204ENST00000446349 CKAP4Q07065 602 aaKnown RBP9.71□□□□□ -0.85
PTPN3-204ENST00000446349 SSFA2P28290 1259 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 HAUS3Q68CZ6 603 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 PICALMQ13492 652 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 TEX11Q8IYF3 940 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 CNKSR1Q969H4 720 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 USP25Q9UHP3 1055 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 IKBKGQ9Y6K9 419 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 LPXNO60711 386 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 GJB2P29033 226 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 CCT2P78371 535 aaKnown RBP9.71□□□□□ -0.86
PTPN3-204ENST00000446349 MRPL50Q8N5N7 158 aaKnown RBP9.71□□□□□ -0.86
PTPN3-204ENST00000446349 TRIM47Q96LD4 638 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 EXOC7Q9UPT5 735 aa9.71□□□□□ -0.86
PTPN3-204ENST00000446349 RASAL2Q9UJF2 1139 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 KIF24Q5T7B8 1368 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 PARD3Q8TEW0 1356 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 ZBED4O75132 1171 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 GAS8O95995 478 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 NT5C2P49902 561 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 USP48Q86UV5 1035 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 LARGE2Q8N3Y3 721 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 INSRP06213 1382 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 CCDC65Q8IXS2 484 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 A0A1W2PP64 1363 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 ATP2A1O14983 1001 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 LMAN1P49257 510 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 NOD1Q9Y239 953 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 DISP1Q96F81 1524 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 IFFO1Q0D2I5 559 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 SLC52A2Q9HAB3 445 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 SNRKQ9NRH2 765 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.7□□□□□ -0.864e-6■■■■□ 19.3
PTPN3-204ENST00000446349 UFL1O94874 794 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 MAGEB6Q8N7X4 407 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 JAKMIP2Q96AA8 810 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 TCHPQ9BT92 498 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 CLIP2Q9UDT6 1046 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 MAP2K1Q02750 393 aaPredicted RBP9.7□□□□□ -0.86
PTPN3-204ENST00000446349 DTHD1Q6ZMT9 781 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 CTNNBL1Q8WYA6 563 aaPredicted RBP9.7□□□□□ -0.86
PTPN3-204ENST00000446349 FAM107BQ9H098 131 aa9.7□□□□□ -0.86
PTPN3-204ENST00000446349 NDC80O14777 642 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 MTHFSDQ2M296 383 aaKnown RBP9.69□□□□□ -0.86
PTPN3-204ENST00000446349 RRAGBQ5VZM2 374 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 SPAG5Q96R06 1193 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PODXL2Q9NZ53 605 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PUF60Q9UHX1 559 aaKnown RBP9.69□□□□□ -0.86
PTPN3-204ENST00000446349 M0QZ92 97 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 KIF4BQ2VIQ3 1234 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 IFT74Q96LB3 600 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 TBC1D9Q6ZT07 1266 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 CSADQ9Y600 493 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PDE1AP54750 535 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PLEKHG3A1L390 1219 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 LPIN2Q92539 896 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 EYA1Q99502 592 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 STMN4Q9H169 189 aaPredicted RBP9.69□□□□□ -0.86
PTPN3-204ENST00000446349 CENPHQ9H3R5 247 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 MAP3K19Q56UN5 1328 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 ABCA8O94911 1581 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PCP11498 1178 aaKnown RBP9.69□□□□□ -0.86
PTPN3-204ENST00000446349 PLCD1P51178 756 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 FAM196AQ6ZSG2 479 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 NLGN1Q8N2Q7 840 aa9.69□□□□□ -0.86
PTPN3-204ENST00000446349 LIG1P18858 919 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 MICALCLQ6ZW33 695 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 RTEL1Q9NZ71 1219 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 KIFAP3Q92845 792 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 RBM8AQ9Y5S9 174 aaKnown RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 PLEKHG1Q9ULL1 1385 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 F8W031 263 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 CA8P35219 290 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 SLC39A6Q13433 755 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 BLMP54132 1417 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 EYA2O00167 538 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 APBA3O96018 575 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 KIAA0753Q2KHM9 967 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 PKNOX2Q96KN3 472 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 CCDC94Q9BW85 323 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 GJA3Q9Y6H8 435 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 ATP2B4P23634 1241 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 DNM2P50570 870 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 HSPA2P54652 639 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 DHX32Q7L7V1 743 aaKnown RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 LLPHQ9BRT6 129 aaKnown RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 ESYT1Q9BSJ8 1104 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 FRMD4BQ9Y2L6 1034 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 POLR3GO15318 223 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 NOP2P46087 812 aaKnown RBP9.68□□□□□ -0.86
PTPN3-204ENST00000446349 GOLGA1Q92805 767 aa9.68□□□□□ -0.86
PTPN3-204ENST00000446349 THRAP3Q9Y2W1 955 aaKnown RBP9.67□□□□□ -0.86
PTPN3-204ENST00000446349 HAND2P61296 217 aa9.67□□□□□ -0.86
PTPN3-204ENST00000446349 VWA3BQ502W6 1294 aa9.67□□□□□ -0.86
PTPN3-204ENST00000446349 TMCO3Q6UWJ1 677 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms