RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 APBB1IPQ7Z5R6 666 aaPredicted RBP8.21□□□□□ -1.09
MCF2-206ENST00000446225 TRPM4Q8TD43 1214 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 PRKAG3Q9UGI9 489 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 FOXD3Q9UJU5 478 aaPredicted RBP8.21□□□□□ -1.09
MCF2-206ENST00000446225 HCN4Q9Y3Q4 1203 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 MINDY4BA8MYZ0 360 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 CREB3O43889 395 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 POTEJP0CG39 1038 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 HCLS1P14317 486 aaPredicted RBP8.21□□□□□ -1.1
MCF2-206ENST00000446225 EIF4A3P38919 411 aaKnown RBP8.21□□□□□ -1.1
MCF2-206ENST00000446225 PBX2P40425 430 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 MASP1P48740 699 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 SH3BP2P78314 561 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 IRX6P78412 446 aaPredicted RBP8.21□□□□□ -1.1
MCF2-206ENST00000446225 CYP2U1Q7Z449 544 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 EAF1Q96JC9 268 aaPredicted RBP8.21□□□□□ -1.1
MCF2-206ENST00000446225 RSRP1Q9BUV0 290 aa8.21□□□□□ -1.1
MCF2-206ENST00000446225 PIK3C2BO00750 1634 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 CDK2AP1O14519 115 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 TNFRSF21O75509 655 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 WNT7BP56706 349 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 BIRC2Q13490 618 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 PWP1Q13610 501 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 FEZ1Q99689 392 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 BCO2Q9BYV7 579 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 TMEM2Q9UHN6 1383 aa8.2□□□□□ -1.1
MCF2-206ENST00000446225 ZNF142P52746 1687 aaPredicted RBP8.2□□□□□ -1.1
MCF2-206ENST00000446225 RHBDL3P58872 404 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 VARS2Q5ST30 1063 aaKnown RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 C16orf86Q6ZW13 317 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 ZNF784Q8NCA9 323 aaPredicted RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 NPHS2Q9NP85 383 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 HOMER2Q9NSB8 354 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 TMEM260Q9NX78 707 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 FAM13BQ9NYF5 915 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 MAP4K5Q9Y4K4 846 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 EID1Q9Y6B2 187 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 ANKRD30BQ9BXX2 1392 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 GBP2P32456 591 aaPredicted RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 IFRD2Q12894 506 aaPredicted RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 COL9A2Q14055 689 aaPredicted RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 TLR1Q15399 786 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 RELL1Q8IUW5 271 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 PKNOX2Q96KN3 472 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 CCDC113Q9H0I3 377 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 GEMIN8Q9NWZ8 242 aaKnown RBP8.19□□□□□ -1.1
MCF2-206ENST00000446225 MSRB2Q9Y3D2 182 aa8.19□□□□□ -1.1
MCF2-206ENST00000446225 STRCQ7RTU9 1775 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 UBR1Q8IWV7 1749 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 SNPHO15079 494 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 PGBD3Q8N328 593 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 ZNF296Q8WUU4 475 aaPredicted RBP8.18□□□□□ -1.1
MCF2-206ENST00000446225 ARHGEF10LQ9HCE6 1279 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 TCEAL9Q9UHQ7 104 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 THRAP3Q9Y2W1 955 aaKnown RBP8.18□□□□□ -1.1
MCF2-206ENST00000446225 TRPM2O94759 1503 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 ARHGAP23Q9P227 1491 aa8.18□□□□□ -1.1
MCF2-206ENST00000446225 ADGRB3O60242 1522 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 TEAD4Q15561 434 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 RGL3Q3MIN7 710 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 SNX29Q8TEQ0 813 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 ZDHHC1Q8WTX9 485 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 L3MBTL2Q969R5 705 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 EMID1Q96A84 441 aaPredicted RBP8.17□□□□□ -1.1
MCF2-206ENST00000446225 C8orf48Q96LL4 319 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 RPS6KC1Q96S38 1066 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 RIMS2Q9UQ26 1411 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 SPHKAPQ2M3C7 1700 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 CLTCL1P53675 1640 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 RALBP1Q15311 655 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 CCDC85BQ15834 202 aaPredicted RBP8.17□□□□□ -1.1
MCF2-206ENST00000446225 TKFCQ3LXA3 575 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 NBPF15Q8N660 670 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 CELF2-AS1Q8N7Q2 184 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 TMEM74Q96NL1 305 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 PHACTR1Q9C0D0 580 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 CNTN3Q9P232 1028 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 CCDC144AA2RUR9 1427 aa8.17□□□□□ -1.1
MCF2-206ENST00000446225 TMEM131LA2VDJ0 1609 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 SLIT1O75093 1534 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 NPHP4O75161 1426 aaPredicted RBP8.16□□□□□ -1.1
MCF2-206ENST00000446225 SMAD7O15105 426 aaKnown RBP8.16□□□□□ -1.1
MCF2-206ENST00000446225 GADD45BO75293 160 aaPredicted RBP8.16□□□□□ -1.1
MCF2-206ENST00000446225 VIL1P09327 827 aaKnown RBP8.16□□□□□ -1.1
MCF2-206ENST00000446225 GSTT1P30711 240 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 SQSTM1Q13501 440 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.16□□□□□ -1.1
MCF2-206ENST00000446225 TRIM56Q9BRZ2 755 aaKnown RBP8.16□□□□□ -1.1
MCF2-206ENST00000446225 NT5C1AQ9BXI3 368 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 SLC6A16Q9GZN6 736 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 CABP1Q9NZU7 370 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 LEMD3Q9Y2U8 911 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 PARP3Q9Y6F1 533 aa8.16□□□□□ -1.1
MCF2-206ENST00000446225 ZFYVE9O95405 1425 aa8.15□□□□□ -1.1
MCF2-206ENST00000446225 GOLGA8CPA6NN73 597 aa8.15□□□□□ -1.1
MCF2-206ENST00000446225 DHX9Q08211 1270 aaKnown RBP8.15□□□□□ -1.1
MCF2-206ENST00000446225 TNNI3KQ59H18 835 aa8.15□□□□□ -1.1
MCF2-206ENST00000446225 FBXL19Q6PCT2 694 aa8.15□□□□□ -1.1
MCF2-206ENST00000446225 TSHZ1Q6ZSZ6 1077 aa8.15□□□□□ -1.1
MCF2-206ENST00000446225 SLC26A8Q96RN1 970 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms