RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	DPCR1	Q3MIW9	517 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	IFIT3	O14879	490 aa	Known RBP	13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	IARS	P41252	1262 aa	Known RBP	13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	RCOR1	Q9UKL0	485 aa		13.74	□□□□□ -0.21
MSH6-204	ENST00000445503	ZAP70	P43403	619 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	PI16	Q6UXB8	463 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	OGFR	Q9NZT2	677 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	MTMR7	Q9Y216	660 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	CEMIP	Q8WUJ3	1361 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	CDKL5	O76039	1030 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	ADORA1	P30542	326 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	TDO2	P48775	406 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	NCBP1	Q09161	790 aa	Known RBP	13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	TMEM67	Q5HYA8	995 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	TEX35	Q5T0J7	233 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	XAGE2	Q96GT9	111 aa		13.73	□□□□□ -0.21
MSH6-204	ENST00000445503	CBFA2T2	O43439	604 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	ADD1	P35611	737 aa	Known RBP	13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	RICTOR	Q6R327	1708 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	KIF2A	O00139	706 aa	Predicted RBP	13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	ANO1	Q5XXA6	986 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	PLA2G4D	Q86XP0	818 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	TRIM22	Q8IYM9	498 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	KRT222	Q8N1A0	295 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	UTP14A	Q9BVJ6	771 aa	Known RBP	13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	NAPB	Q9H115	298 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	KIAA1468	Q9P260	1216 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	SPATA31D1	Q6ZQQ2	1576 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	GOLGA8F	Q08AF8	430 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	GOLGA8DP	Q0D2H9	430 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	CCDC150	Q8NCX0	1101 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	MAST3	O60307	1309 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503		B4E1Z4	1266 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503		M0R2C6	588 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	FGA	P02671	866 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	ZNF397	Q8NF99	534 aa	Predicted RBP	13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	OSBP2	Q969R2	916 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	AIFM3	Q96NN9	605 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	FEZ1	Q99689	392 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	DSCC1	Q9BVC3	393 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	SLC12A7	Q9Y666	1083 aa		13.72	□□□□□ -0.21
MSH6-204	ENST00000445503	ARHGAP29	Q52LW3	1261 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	MYSM1	Q5VVJ2	828 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	TMCO3	Q6UWJ1	677 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	MRFAP1L1	Q96HT8	127 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	GTPBP4	Q9BZE4	634 aa	Known RBP	13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	MINDY4B	A8MYZ0	360 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	GPAA1	O43292	621 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	GNG11	P61952	73 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	CCDC102B	Q68D86	513 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	ZKSCAN3	Q9BRR0	538 aa		13.71	□□□□□ -0.21
MSH6-204	ENST00000445503	ZBTB43	O43298	467 aa		13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	FANCC	Q00597	558 aa		13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	SART3	Q15020	963 aa	Known RBP	13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	PDIA6	Q15084	440 aa		13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	ERCC6L	Q2NKX8	1250 aa		13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	ADAL	Q6DHV7	355 aa		13.71	□□□□□ -0.22
MSH6-204	ENST00000445503	TRMT112	Q9UI30	125 aa	Known RBP	13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	CCP110	O43303	1012 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	ZMYM1	Q5SVZ6	1142 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	ZCRB1	Q8TBF4	217 aa	Known RBP	13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	ABCF2	Q9UG63	623 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	PXDNL	A1KZ92	1463 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	PFKFB1	P16118	471 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	KCNB2	Q92953	911 aa		13.7	□□□□□ -0.22
MSH6-204	ENST00000445503	DMTN	Q08495	405 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	ZNF274	Q96GC6	653 aa	Predicted RBP	13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	CLIC6	Q96NY7	704 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	ZNF609	O15014	1411 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	CARMIL3	Q8ND23	1372 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	MED23	Q9ULK4	1368 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	SSRP1	Q08945	709 aa	Known RBP	13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	PNOC	Q13519	176 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	TMOD3	Q9NYL9	352 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	ERBB3	P21860	1342 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	ZFY	P08048	801 aa	Predicted RBP	13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	TPM1	P09493	284 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	GTF2E1	P29083	439 aa	Predicted RBP	13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	ERO1A	Q96HE7	468 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	MPHOSPH8	Q99549	860 aa		13.69	□□□□□ -0.22
MSH6-204	ENST00000445503	IQCB1	Q15051	598 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	ATL3	Q6DD88	541 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	PPFIBP1	Q86W92	1011 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	LRP2BP	Q9P2M1	347 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.68	□□□□□ -0.22	2e-7	■■■■■ 27.6
MSH6-204	ENST00000445503	KARS	Q15046	597 aa	Known RBP	13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	BRAP	Q7Z569	592 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	VPS37D	Q86XT2	251 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	FBXO18	Q8NFZ0	1043 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	ANKRD18B	A2A2Z9	1011 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	ATP1A3	P13637	1013 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	AFM	P43652	599 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	KRT40	Q6A162	431 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	LINC00301	Q8NCQ3	95 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	UBAC1	Q9BSL1	405 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	AGL	P35573	1532 aa		13.68	□□□□□ -0.22
MSH6-204	ENST00000445503	CYP27B1	O15528	508 aa		13.67	□□□□□ -0.22
MSH6-204	ENST00000445503	CTDNEP1	O95476	244 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms