RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.22□□□□□ -0.61
CUX1-206ENST00000437600 C4BP0C0L5 1744 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 A0A087WWV3 80 aa11.21□□□□□ -0.61
CUX1-206ENST00000437600 TULP1O00294 542 aaPredicted RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 EPB41L2O43491 1005 aaKnown RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 PTMAP06454 111 aaKnown RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 CSF1RP07333 972 aa11.21□□□□□ -0.61
CUX1-206ENST00000437600 OTUD7BQ6GQQ9 843 aa11.21□□□□□ -0.61
CUX1-206ENST00000437600 C17orf53Q8N3J3 647 aaPredicted RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 SH2B1Q9NRF2 756 aaPredicted RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 GJB4Q9NTQ9 266 aa11.21□□□□□ -0.61
CUX1-206ENST00000437600 RTCBQ9Y3I0 505 aaKnown RBP11.21□□□□□ -0.61
CUX1-206ENST00000437600 MED23Q9ULK4 1368 aa11.21□□□□□ -0.62
CUX1-206ENST00000437600 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.21□□□□□ -0.62
CUX1-206ENST00000437600 ANKRD18BA2A2Z9 1011 aa11.21□□□□□ -0.62
CUX1-206ENST00000437600 M0R2C6 588 aa11.21□□□□□ -0.62
CUX1-206ENST00000437600 HSPD1P10809 573 aaKnown RBP11.21□□□□□ -0.62
CUX1-206ENST00000437600 EZH2Q15910 746 aaKnown RBP11.21□□□□□ -0.62
CUX1-206ENST00000437600 ZNF827Q17R98 1081 aa11.21□□□□□ -0.62
CUX1-206ENST00000437600 ZNF34Q8IZ26 560 aa11.21□□□□□ -0.62
CUX1-206ENST00000437600 TAF1P21675 1872 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 WTIPA6NIX2 430 aaPredicted RBP11.2□□□□□ -0.62
CUX1-206ENST00000437600 ZAP70P43403 619 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 UBE2HP62256 183 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 SCRN1Q12765 414 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 TTC39AQ5SRH9 613 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 TBC1D9BQ66K14 1250 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 ZSCAN30Q86W11 494 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 INCENPQ9NQS7 918 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 NKX2-3Q8TAU0 364 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 ERCC4Q92889 916 aaPredicted RBP11.2□□□□□ -0.62
CUX1-206ENST00000437600 PUS7LQ9H0K6 701 aaKnown RBP11.2□□□□□ -0.62
CUX1-206ENST00000437600 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
CUX1-206ENST00000437600 PDE8AO60658 829 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 ATP2B3Q16720 1220 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 FBXW7Q969H0 707 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 RIPOR2Q9Y4F9 1068 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 SH3TC1Q8TE82 1336 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 ERVV-1B6SEH8 477 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 SYAP1Q96A49 352 aaPredicted RBP11.19□□□□□ -0.62
CUX1-206ENST00000437600 UTP14AQ9BVJ6 771 aaKnown RBP11.19□□□□□ -0.62
CUX1-206ENST00000437600 IQSEC3Q9UPP2 1182 aaPredicted RBP11.19□□□□□ -0.62
CUX1-206ENST00000437600 CNTNAP4Q9C0A0 1308 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 ANKRD36CQ5JPF3 1778 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 H3BQV1 296 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 RPS6KA4O75676 772 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 RFC4P35249 363 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 CCDC158Q5M9N0 1113 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 IFFO2Q5TF58 517 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 C3orf67Q6ZVT6 689 aa11.19□□□□□ -0.62
CUX1-206ENST00000437600 TTC12Q9H892 705 aaPredicted RBP11.19□□□□□ -0.62
CUX1-206ENST00000437600 GOLGA6L4A6NEF3 574 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 AP5Z1O43299 807 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 ZPR1O75312 459 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 CIAO1O76071 339 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 CCDC183Q5T5S1 534 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 SPC24Q8NBT2 197 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 DACT1Q9NYF0 836 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 TFCP2L1Q9NZI6 479 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 ATP6V1DQ9Y5K8 247 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 MAST3O60307 1309 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 C4AP0C0L4 1744 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 E7EWF7 191 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 RXRAP19793 462 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 GTF2E1P29083 439 aaPredicted RBP11.18□□□□□ -0.62
CUX1-206ENST00000437600 PHKA1P46020 1223 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 TRAPPC3LQ5T215 181 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 UBR3Q6ZT12 1888 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 FAM184AQ8NB25 1140 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 PDLIM2Q96JY6 352 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 SPATA32Q96LK8 384 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 PLA2G12BQ9BX93 195 aa11.18□□□□□ -0.62
CUX1-206ENST00000437600 PDGFDQ9GZP0 370 aaPredicted RBP11.18□□□□□ -0.62
CUX1-206ENST00000437600 RREB1Q92766 1687 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 CDHR2Q9BYE9 1310 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 ADCY5O95622 1261 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 MPHOSPH8Q99549 860 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 TNS1Q9HBL0 1735 aaKnown RBP11.17□□□□□ -0.62
CUX1-206ENST00000437600 RNF113AO15541 343 aaKnown RBP11.17□□□□□ -0.62
CUX1-206ENST00000437600 IDH1O75874 414 aaKnown RBP11.17□□□□□ -0.62
CUX1-206ENST00000437600 FGAP02671 866 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 APPP05067 770 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 MCAMP43121 646 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 KRT85P78386 507 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 ERFEQ4G0M1 354 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 MSL1Q68DK7 614 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 R3HCC1Q9Y3T6 440 aaKnown RBP11.17□□□□□ -0.62
CUX1-206ENST00000437600 U3KPZ7 1027 aaPredicted RBP11.17□□□□□ -0.62
CUX1-206ENST00000437600 NR1I2O75469 434 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 CTDNEP1O95476 244 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 SLC51AQ86UW1 340 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 GTF3C6Q969F1 213 aa11.17□□□□□ -0.62
CUX1-206ENST00000437600 RIC1Q4ADV7 1423 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 ANKRD1Q15327 319 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 ZMYM1Q5SVZ6 1142 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 DHX32Q7L7V1 743 aaKnown RBP11.16□□□□□ -0.62
CUX1-206ENST00000437600 HOMEZQ8IX15 550 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 PGBD1Q96JS3 809 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 HMG20BQ9P0W2 317 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 AKAP2Q9Y2D5 859 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms