RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NSFL1CQ9UNZ2 370 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 CNPY2Q9Y2B0 182 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 TRAPPC3LQ5T215 181 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 ANKRD2Q9GZV1 360 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 CGNQ9P2M7 1197 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 PARP1P09874 1014 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 ZNF165P49910 485 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 RBM27Q9P2N5 1060 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 CROCC2H7BZ55 1655 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 MSANTD4Q8NCY6 345 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 FRMD4BQ9Y2L6 1034 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 ABCC10Q5T3U5 1492 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 MYH6P13533 1939 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 HSF2BPO75031 334 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 CALML3P27482 149 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 NECAB1Q8N987 351 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 IL27Q8NEV9 243 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 CTAGE9A4FU28 777 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 IL15P40933 162 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 CCDC117Q8IWD4 279 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 EYA3Q99504 573 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 C14orf93Q9H972 538 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 ZNF408Q9H9D4 720 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 CAVIN2O95810 425 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 TICAM2Q86XR7 235 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 PRAG1Q86YV5 1406 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 PRPHP41219 470 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 CHST3Q7LGC8 479 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 CCDC155Q8N6L0 562 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 ZSWIM4Q9H7M6 989 aa13.65□□□□□ -0.22
CCDC88A-207ENST00000436346 CKAP4Q07065 602 aaKnown RBP13.65□□□□□ -0.23
CCDC88A-207ENST00000436346 ANO6Q4KMQ2 910 aa13.65□□□□□ -0.23
CCDC88A-207ENST00000436346 CCDC63Q8NA47 563 aa13.65□□□□□ -0.23
CCDC88A-207ENST00000436346 BICC1Q9H694 974 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 IRS4O14654 1257 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 UFL1O94874 794 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 UBXN1Q04323 297 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 AKAP4Q5JQC9 854 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 TMOD4Q9NZQ9 345 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 PSMA7O14818 248 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 CEP135Q66GS9 1140 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 BEGAINQ9BUH8 593 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 NOD1Q9Y239 953 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 CCDC14Q49A88 953 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 TBC1D2Q9BYX2 928 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 RHPN1Q8TCX5 695 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 LRRC59Q96AG4 307 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 CDC42BPBQ9Y5S2 1711 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 MXRA7P84157 204 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 C6orf163Q5TEZ5 329 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 BRF1Q92994 677 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 MYH11P35749 1972 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 SH3BP5O60239 455 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 GAS8O95995 478 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 SDSP20132 328 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 GNA11P29992 359 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 DCAF17Q5H9S7 520 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 TCEANC2Q96MN5 208 aa13.64□□□□□ -0.23
CCDC88A-207ENST00000436346 SBNO2Q9Y2G9 1366 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 CHMP2AO43633 222 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 KRT5P13647 590 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 RNF216Q9NWF9 866 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 NCKAP5LQ9HCH0 1330 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 CCNT1O60563 726 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 BICDL2A1A5D9 508 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 SNX16P57768 344 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 BTG4Q9NY30 223 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 KSR2Q6VAB6 950 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 KDM5CP41229 1560 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 NOP56O00567 594 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 ZSCAN22P10073 491 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 MEIS3Q99687 375 aa13.63□□□□□ -0.23
CCDC88A-207ENST00000436346 ARHGEF10LQ9HCE6 1279 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 NMIQ13287 307 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 TRIM6Q9C030 488 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 PSMC4P43686 418 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 GNG11P61952 73 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 ANKS4BQ8N8V4 417 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 HARSP12081 509 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 SH2D4AQ9H788 454 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 CCNL1Q9UK58 526 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 HELBQ8NG08 1087 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 RBM8AQ9Y5S9 174 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 MYH7P12883 1935 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 ZSCAN23Q3MJ62 389 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 SPATA24Q86W54 205 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 RFX1P22670 979 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 CCDC114Q96M63 670 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 MYH8P13535 1937 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 GIMAP6Q6P9H5 292 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 LMBR1LQ6UX01 489 aa13.62□□□□□ -0.23
CCDC88A-207ENST00000436346 TFCP2Q12800 502 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 NEK11Q8NG66 645 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 LAMC1P11047 1609 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 ARHGEF12Q9NZN5 1544 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 TCHHQ07283 1943 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 NUP153P49790 1475 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 UHRF1BP1Q6BDS2 1440 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 TRIM75PA6NK02 468 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms