RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 LIN7BQ9HAP6 207 aa6.34□□□□□ -1.39
CLK1-204ENST00000432425 A0A1W2PP55 124 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 DYRK3O43781 588 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 ALX3O95076 343 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 C19orf57Q0VDD7 668 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 IKBKEQ14164 716 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 NKAPLQ5M9Q1 402 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 ALKBH8Q96BT7 664 aaKnown RBP6.33□□□□□ -1.4
CLK1-204ENST00000432425 KLHDC7BQ96G42 594 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 MEGF10Q96KG7 1140 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 KCNK4Q9NYG8 393 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 BTBD11A6QL63 1104 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 EIF1AYO14602 144 aaKnown RBP6.33□□□□□ -1.4
CLK1-204ENST00000432425 WISP1O95388 367 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 GLB1P16278 677 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 AGGF1Q8N302 714 aaeCLIP6.33□□□□□ -1.4
CLK1-204ENST00000432425 SSBP4Q9BWG4 385 aaPredicted RBP6.33□□□□□ -1.4
CLK1-204ENST00000432425 EHD4Q9H223 541 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 NPHS2Q9NP85 383 aa6.33□□□□□ -1.4
CLK1-204ENST00000432425 METTL12A8MUP2 240 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 DDX3YO15523 660 aaKnown RBP6.32□□□□□ -1.4
CLK1-204ENST00000432425 IGHA2P01877 340 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 H2AFB1P0C5Y9 115 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 H2AFB2P0C5Z0 115 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 NLRP12P59046 1061 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 VN1R5Q7Z5H4 357 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 CCNJLQ8IV13 435 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 UBASH3BQ8TF42 649 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 FOXD4L4Q8WXT5 416 aaPredicted RBP6.32□□□□□ -1.4
CLK1-204ENST00000432425 CSRNP1Q96S65 589 aa6.32□□□□□ -1.4
CLK1-204ENST00000432425 A0A096LPE4 126 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 A0A1W2PPZ6 126 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 SOX1O00570 391 aaPredicted RBP6.31□□□□□ -1.4
CLK1-204ENST00000432425 ADAM11O75078 769 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 GADD45BO75293 160 aaPredicted RBP6.31□□□□□ -1.4
CLK1-204ENST00000432425 KIAA0319Q5VV43 1072 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 TMC7Q7Z402 723 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 CCDC74AQ96AQ1 378 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 KRTAP17-1Q9BYP8 105 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 CEP41Q9BYV8 373 aa6.31□□□□□ -1.4
CLK1-204ENST00000432425 TM4SF5O14894 197 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 ESRRAP11474 423 aaPredicted RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 Q6ZS46 218 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 TCF12Q99081 682 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 KRTAP9-4Q9BYQ2 154 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 EIF4EBP3O60516 100 aaPredicted RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 PDIA4P13667 645 aaKnown RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 PCDH1Q08174 1060 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 SPRED3Q2MJR0 410 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 HGSNATQ68CP4 663 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 KIAA1211Q6ZU35 1233 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 DZIP1LQ8IYY4 767 aaKnown RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 USP26Q9BXU7 913 aa6.3□□□□□ -1.4
CLK1-204ENST00000432425 CLEC4MQ9H2X3 399 aaPredicted RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 SOX17Q9H6I2 414 aaPredicted RBP6.3□□□□□ -1.4
CLK1-204ENST00000432425 GRIA4P48058 902 aa6.29□□□□□ -1.4
CLK1-204ENST00000432425 PLCB3Q01970 1234 aa6.29□□□□□ -1.4
CLK1-204ENST00000432425 ZSCAN29Q8IWY8 852 aaPredicted RBP6.29□□□□□ -1.4
CLK1-204ENST00000432425 RUSC1Q9BVN2 902 aa6.29□□□□□ -1.4
CLK1-204ENST00000432425 RNF208Q9H0X6 261 aa6.29□□□□□ -1.4
CLK1-204ENST00000432425 TRAK1Q9UPV9 953 aa6.29□□□□□ -1.4
CLK1-204ENST00000432425 GSTM4Q03013 218 aa6.28□□□□□ -1.4
CLK1-204ENST00000432425 NLRP2Q9NX02 1062 aa6.28□□□□□ -1.4
CLK1-204ENST00000432425 PNMA6FA0A0J9YX94 578 aa6.27□□□□□ -1.41
CLK1-204ENST00000432425 TREHO43280 583 aa6.27□□□□□ -1.41
CLK1-204ENST00000432425 PRR23CQ6ZRP0 262 aa6.27□□□□□ -1.41
CLK1-204ENST00000432425 AEBP1Q8IUX7 1158 aa6.27□□□□□ -1.41
CLK1-204ENST00000432425 DDX54Q8TDD1 881 aaKnown RBP6.27□□□□□ -1.41
CLK1-204ENST00000432425 SART1O43290 800 aaKnown RBP6.26□□□□□ -1.41
CLK1-204ENST00000432425 DSC3Q14574 896 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 UVSSAQ2YD98 709 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 PRSS36Q5K4E3 855 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 ANKRD34AQ69YU3 496 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 PRPF40BQ6NWY9 871 aaKnown RBP6.26□□□□□ -1.41
CLK1-204ENST00000432425 FDX2Q6P4F2 183 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 EPS8L3Q8TE67 593 aaKnown RBP6.26□□□□□ -1.41
CLK1-204ENST00000432425 UBL7Q96S82 380 aaPredicted RBP6.26□□□□□ -1.41
CLK1-204ENST00000432425 PPP4R2Q9NY27 417 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 ITPKAP23677 461 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 ITGB7P26010 798 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 MAPK8P45983 427 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 UTP4Q969X6 686 aaKnown RBP6.26□□□□□ -1.41
CLK1-204ENST00000432425 ASB16Q96NS5 453 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 ZNF576Q9H609 170 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 ABCB6Q9NP58 842 aa6.26□□□□□ -1.41
CLK1-204ENST00000432425 LOC100289279A0A1B0GTE1 492 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 TMEM238LA0A1B0GVL6 79 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 DHX15O43143 795 aaKnown RBP6.25□□□□□ -1.41
CLK1-204ENST00000432425 PTPN12Q05209 780 aaKnown RBP6.25□□□□□ -1.41
CLK1-204ENST00000432425 GRM2Q14416 872 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 ENOX2Q16206 610 aaKnown RBP6.25□□□□□ -1.41
CLK1-204ENST00000432425 ZNF423Q2M1K9 1284 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 NUTM2GQ5VZR2 741 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 RAXQ9Y2V3 346 aa6.25□□□□□ -1.41
CLK1-204ENST00000432425 MEGF11A6BM72 1044 aa6.24□□□□□ -1.41
CLK1-204ENST00000432425 CYP11A1P05108 521 aa6.24□□□□□ -1.41
CLK1-204ENST00000432425 ZMYM1Q5SVZ6 1142 aa6.24□□□□□ -1.41
CLK1-204ENST00000432425 FAM46AQ96IP4 442 aaKnown RBP6.24□□□□□ -1.41
CLK1-204ENST00000432425 CYP4F12Q9HCS2 524 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms