RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 ZNF274Q96GC6 653 aaPredicted RBP16.5■□□□□ 0.23
HOXC4-202ENST00000430889 NHSQ6T4R5 1651 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 WDR19Q8NEZ3 1342 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 RGL2O15211 777 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 KCNQ2O43526 872 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 KRT85P78386 507 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 APOBRQ0VD83 1088 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 ZSCAN25Q6NSZ9 544 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.5■□□□□ 0.23
HOXC4-202ENST00000430889 TSPY26PQ9H489 355 aa16.5■□□□□ 0.23
HOXC4-202ENST00000430889 BTAF1O14981 1849 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 TIAM2Q8IVF5 1701 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 HSP90B1P14625 803 aaKnown RBP16.49■□□□□ 0.23
HOXC4-202ENST00000430889 PDIA3P30101 505 aaKnown RBP16.49■□□□□ 0.23
HOXC4-202ENST00000430889 VPS72Q15906 364 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 IMMTQ16891 758 aaKnown RBP16.49■□□□□ 0.23
HOXC4-202ENST00000430889 FUCA2Q9BTY2 467 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 NBPF3Q9H094 633 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 SEC31BQ9NQW1 1179 aa16.49■□□□□ 0.23
HOXC4-202ENST00000430889 TOM1O60784 492 aa16.48■□□□□ 0.23
HOXC4-202ENST00000430889 CLEC4GQ6UXB4 293 aa16.48■□□□□ 0.23
HOXC4-202ENST00000430889 FERMT3Q86UX7 667 aa16.48■□□□□ 0.23
HOXC4-202ENST00000430889 CNTNAP4Q9C0A0 1308 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 LETM1O95202 739 aaPredicted RBP16.47■□□□□ 0.23
HOXC4-202ENST00000430889 PDE6AP16499 860 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 ANTXR2P58335 489 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 HMGN5P82970 282 aaKnown RBP16.47■□□□□ 0.23
HOXC4-202ENST00000430889 CCDC152Q4G0S7 254 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 NAA16Q6N069 864 aaPredicted RBP16.47■□□□□ 0.23
HOXC4-202ENST00000430889 FAM173BQ6P4H8 233 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 LINC00116Q8NCU8 138 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 TAF1P21675 1872 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 ZMYM6O95789 1325 aa16.47■□□□□ 0.23
HOXC4-202ENST00000430889 SLC5A1P13866 664 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 CLCN1P35523 988 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 SLC9C2Q5TAH2 1124 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 HELBQ8NG08 1087 aaPredicted RBP16.46■□□□□ 0.23
HOXC4-202ENST00000430889 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 NIP7Q9Y221 180 aaKnown RBP eCLIP16.46■□□□□ 0.23
HOXC4-202ENST00000430889 TAF1LQ8IZX4 1826 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 ZNF532Q9HCE3 1301 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 PTPDC1A2A3K4 754 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 ESPNB1AK53 854 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 ALX1Q15699 326 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 SCAND2PQ9GZW5 306 aaPredicted RBP16.46■□□□□ 0.23
HOXC4-202ENST00000430889 ZSCAN16Q9H4T2 348 aaPredicted RBP16.46■□□□□ 0.23
HOXC4-202ENST00000430889 LY75O60449 1722 aa16.46■□□□□ 0.23
HOXC4-202ENST00000430889 ADD1P35611 737 aaKnown RBP16.45■□□□□ 0.22
HOXC4-202ENST00000430889 HAND2P61296 217 aa16.45■□□□□ 0.22
HOXC4-202ENST00000430889 FGD1P98174 961 aa16.45■□□□□ 0.22
HOXC4-202ENST00000430889 HS1BP3Q53T59 392 aa16.45■□□□□ 0.22
HOXC4-202ENST00000430889 SPATA5Q8NB90 893 aa16.45■□□□□ 0.22
HOXC4-202ENST00000430889 FBXO41Q8TF61 875 aa16.45■□□□□ 0.22
HOXC4-202ENST00000430889 LEO1Q8WVC0 666 aaPredicted RBP16.45■□□□□ 0.22
HOXC4-202ENST00000430889 ANP32BQ92688 251 aaKnown RBP16.45■□□□□ 0.22
HOXC4-202ENST00000430889 GPHNQ9NQX3 736 aaPredicted RBP16.45■□□□□ 0.22
HOXC4-202ENST00000430889 ECM29Q5VYK3 1845 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 SNAP23O00161 211 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 PIP4K2BP78356 416 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 FAM98CQ17RN3 349 aaKnown RBP16.44■□□□□ 0.22
HOXC4-202ENST00000430889 CHST3Q7LGC8 479 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 DDX11Q96FC9 970 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 STRBPQ96SI9 672 aaKnown RBP16.44■□□□□ 0.22
HOXC4-202ENST00000430889 MPHOSPH8Q99549 860 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 NCOA5Q9HCD5 579 aaKnown RBP16.44■□□□□ 0.22
HOXC4-202ENST00000430889 HPS5Q9UPZ3 1129 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 ZNF652Q9Y2D9 606 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 SBF2Q86WG5 1849 aa16.44■□□□□ 0.22
HOXC4-202ENST00000430889 A0A0G2JS52 829 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 PRC1O43663 620 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 FDPSP14324 419 aaKnown RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 MCM5P33992 734 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 TBC1D10CQ8IV04 446 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 FNBP4Q8N3X1 1017 aaPredicted RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 FAM184AQ8NB25 1140 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 NCOA7Q8NI08 942 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 CHMP4CQ96CF2 233 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 ZNF804BA4D1E1 1349 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 FAM177BA6PVY3 158 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 ZNF213O14771 459 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 IDH1O75874 414 aaKnown RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 IGHMBP2P38935 993 aaKnown RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 CCT2P78371 535 aaKnown RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 SF3B3Q15393 1217 aaKnown RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 UVSSAQ2YD98 709 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 NKX2-3Q8TAU0 364 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 TRIM44Q96DX7 344 aaPredicted RBP16.43■□□□□ 0.22
HOXC4-202ENST00000430889 BCL2L12Q9HB09 334 aa16.43■□□□□ 0.22
HOXC4-202ENST00000430889 CARMIL3Q8ND23 1372 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 LIG1P18858 919 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 CHRNDQ07001 517 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 C3orf67Q6ZVT6 689 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 ILDR1Q86SU0 546 aaPredicted RBP16.42■□□□□ 0.22
HOXC4-202ENST00000430889 PGBD1Q96JS3 809 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 CACNA1SQ13698 1873 aa16.42■□□□□ 0.22
HOXC4-202ENST00000430889 SLC10A5Q5PT55 438 aa16.41■□□□□ 0.22
HOXC4-202ENST00000430889 RC3H1Q5TC82 1133 aaKnown RBP16.41■□□□□ 0.22
HOXC4-202ENST00000430889 RBM43Q6ZSC3 357 aaKnown RBP16.41■□□□□ 0.22
HOXC4-202ENST00000430889 RNF214Q8ND24 703 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms