RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PES1O00541 588 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 FGAP02671 866 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 SLC3A2P08195 630 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 FDPSP14324 419 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 KMT5BQ4FZB7 885 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 FBXO38Q6PIJ6 1188 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 MIGA1Q8NAN2 632 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 NRXN3Q9Y4C0 1643 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 SNRPA1P09661 255 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 IQCB1Q15051 598 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 CCDC57Q2TAC2 916 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 AMOTQ4VCS5 1084 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 DHX40Q8IX18 779 aaKnown RBP10.06□□□□□ -0.8
USP40-203ENST00000427112 CCDC24Q8N4L8 307 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 KBTBD3Q8NAB2 608 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 TBC1D2BQ9UPU7 963 aa10.06□□□□□ -0.8
USP40-203ENST00000427112 ATP5JP18859 108 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 ADKP55263 362 aaKnown RBP10.05□□□□□ -0.8
USP40-203ENST00000427112 SNW1Q13573 536 aaKnown RBP10.05□□□□□ -0.8
USP40-203ENST00000427112 ANKLE2Q86XL3 938 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 PLA2G4DQ86XP0 818 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 IRX2Q9BZI1 471 aaPredicted RBP10.05□□□□□ -0.8
USP40-203ENST00000427112 TERF1P54274 439 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 KCNH5Q8NCM2 988 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 MRPS27Q92552 414 aaKnown RBP10.05□□□□□ -0.8
USP40-203ENST00000427112 CNNM1Q9NRU3 951 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 C3P01024 1663 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 TULP1O00294 542 aaPredicted RBP10.05□□□□□ -0.8
USP40-203ENST00000427112 GRIN1Q05586 938 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 METTL24Q5JXM2 366 aa10.05□□□□□ -0.8
USP40-203ENST00000427112 SPTLC2O15270 562 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 ZNF202O95125 648 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 PHKG2P15735 406 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 ERCC3P19447 782 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 SFPQP23246 707 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP40-203ENST00000427112 AFMP43652 599 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 SLC9C2Q5TAH2 1124 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 CERS3Q8IU89 383 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 SMAP1Q8IYB5 467 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 SMYD4Q8IYR2 804 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 TDRD7Q8NHU6 1098 aaKnown RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 SLC26A6Q9BXS9 759 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 WTIPA6NIX2 430 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 PRDM1O75626 825 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 WDHD1O75717 1129 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 HSPA2P54652 639 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 KCNQ4P56696 695 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 DMTNQ08495 405 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 TEX35Q5T0J7 233 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 XAGE2Q96GT9 111 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 ANO10Q9NW15 660 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 MAPK8IP1Q9UQF2 711 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 CEMIPQ8WUJ3 1361 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 PLEKHG1Q9ULL1 1385 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 A0A0U1RQJ8 604 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 RFX5P48382 616 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 FAM160A1Q05DH4 1040 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 MTX1Q13505 466 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 KRT32Q14532 448 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 KCTD19Q17RG1 926 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 ARHGAP29Q52LW3 1261 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 FKBP15Q5T1M5 1219 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 ATRIPQ8WXE1 791 aa10.04□□□□□ -0.8
USP40-203ENST00000427112 ZNF396Q96N95 335 aaPredicted RBP10.04□□□□□ -0.8
USP40-203ENST00000427112 SMTNL1A8MU46 457 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 PFKFB1P16118 471 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 GTF2F1P35269 517 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP40-203ENST00000427112 ARMCX5Q6P1M9 558 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 HAUS7Q99871 368 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 ALG1Q9BT22 464 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 MINDY4BA8MYZ0 360 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 ZNF213O14771 459 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 PRKAB2O43741 272 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 LDHAL6AQ6ZMR3 332 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 ATG9AQ7Z3C6 839 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 IFNL2Q8IZJ0 200 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 SIRT1Q96EB6 747 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 CWC25Q9NXE8 425 aaPredicted RBP10.03□□□□□ -0.8
USP40-203ENST00000427112 RNF113AO15541 343 aaKnown RBP10.03□□□□□ -0.8
USP40-203ENST00000427112 MTERF4Q7Z6M4 381 aaKnown RBP10.03□□□□□ -0.8
USP40-203ENST00000427112 CARD6Q9BX69 1037 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 LZTFL1Q9NQ48 299 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 PRDM11Q9NQV5 511 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 FANCLQ9NW38 375 aa10.03□□□□□ -0.8
USP40-203ENST00000427112 CARMIL3Q8ND23 1372 aa10.02□□□□□ -0.8
USP40-203ENST00000427112 MED23Q9ULK4 1368 aa10.02□□□□□ -0.8
USP40-203ENST00000427112 GPAA1O43292 621 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 PFKFB2O60825 505 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 CCZ1BP86790 482 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 CCZ1P86791 482 aaPredicted RBP10.02□□□□□ -0.81
USP40-203ENST00000427112 CCDC158Q5M9N0 1113 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 KIF18AQ8NI77 898 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 UIMC1Q96RL1 719 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 HMG20BQ9P0W2 317 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 ABCF2Q9UG63 623 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 MROH7-TTC4A0A0A0MT08 1334 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 PATL2C9JE40 543 aaKnown RBP10.02□□□□□ -0.81
USP40-203ENST00000427112 GUCY1A2P33402 732 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 UBASH3AP57075 661 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 TRDNQ13061 729 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms