RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LRP2BPQ9P2M1 347 aa12.25□□□□□ -0.45
CD44-207ENST00000425428 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.25□□□□□ -0.45
CD44-207ENST00000425428 IGSF3O75054 1194 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 IL1R1P14778 569 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 MAP3K12Q12852 859 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 TNIP1Q15025 636 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 BMP2KLQ5H9B9 411 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 SLF2Q8IX21 1173 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 FSD1Q9BTV5 496 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 DBNDD1Q9H9R9 158 aa12.24□□□□□ -0.45
CD44-207ENST00000425428 IQSEC3Q9UPP2 1182 aaPredicted RBP12.24□□□□□ -0.45
CD44-207ENST00000425428 PDS5AQ29RF7 1337 aaKnown RBP12.23□□□□□ -0.45
CD44-207ENST00000425428 GOLIM4O00461 696 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TSHZ3Q63HK5 1081 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TICAM2Q86XR7 235 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TDRD7Q8NHU6 1098 aaKnown RBP12.23□□□□□ -0.45
CD44-207ENST00000425428 SNRKQ9NRH2 765 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 ABCF2Q9UG63 623 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 ZNRF3Q9ULT6 936 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 SALL3Q9BXA9 1300 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 USP17L3A6NCW0 530 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 USP17L4A6NCW7 530 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 ZBTB22O15209 634 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 ZFYP08048 801 aaPredicted RBP12.23□□□□□ -0.45
CD44-207ENST00000425428 KLRK1P26718 216 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 MCAMP43121 646 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 RASGRF1Q13972 1273 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TMED8Q6PL24 325 aaPredicted RBP12.23□□□□□ -0.45
CD44-207ENST00000425428 USP17L1Q7RTZ2 530 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 PI4K2BQ8TCG2 481 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 RUFY2Q8WXA3 655 aa12.23□□□□□ -0.45
CD44-207ENST00000425428 NOL10Q9BSC4 688 aaKnown RBP12.23□□□□□ -0.45
CD44-207ENST00000425428 DUOX1Q9NRD9 1551 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 DICER1Q9UPY3 1922 aaKnown RBP12.22□□□□□ -0.45
CD44-207ENST00000425428 MAST3O60307 1309 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 MYO3BQ8WXR4 1341 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 NFKBIEO00221 500 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 LDHBP07195 334 aaKnown RBP12.22□□□□□ -0.45
CD44-207ENST00000425428 GTF2IP78347 998 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 GSTO1P78417 241 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 STRIP1Q5VSL9 837 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 DZIP1Q86YF9 867 aaKnown RBP12.22□□□□□ -0.45
CD44-207ENST00000425428 DIAPH3Q9NSV4 1193 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 RAI14Q9P0K7 980 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 HMG20BQ9P0W2 317 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 SUGT1Q9Y2Z0 365 aa12.22□□□□□ -0.45
CD44-207ENST00000425428 MYH7P12883 1935 aa12.21□□□□□ -0.45
CD44-207ENST00000425428 WTIPA6NIX2 430 aaPredicted RBP12.21□□□□□ -0.45
CD44-207ENST00000425428 IDH1O75874 414 aaKnown RBP12.21□□□□□ -0.45
CD44-207ENST00000425428 MAP4K4O95819 1239 aaPredicted RBP12.21□□□□□ -0.45
CD44-207ENST00000425428 ZAP70P43403 619 aa12.21□□□□□ -0.45
CD44-207ENST00000425428 RASSF7Q02833 373 aa12.21□□□□□ -0.45
CD44-207ENST00000425428 AKAP11Q9UKA4 1901 aa12.21□□□□□ -0.46
CD44-207ENST00000425428 LDHCP07864 332 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 YBX3P16989 372 aaKnown RBP eCLIP12.2□□□□□ -0.46
CD44-207ENST00000425428 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 DPY19L2Q6NUT2 758 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 OGFOD1Q8N543 542 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 RNF181Q9P0P0 153 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 HDAC9Q9UKV0 1011 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 SBF1O95248 1867 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 FAM205AQ6ZU69 1335 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 CDC45O75419 566 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 SDSP20132 328 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 MMP14P50281 582 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 MFAP1P55081 439 aaKnown RBP12.2□□□□□ -0.46
CD44-207ENST00000425428 FKBP1AP62942 108 aaKnown RBP12.2□□□□□ -0.46
CD44-207ENST00000425428 CACNB1Q02641 598 aaPredicted RBP12.2□□□□□ -0.46
CD44-207ENST00000425428 CIAPIN1Q6FI81 312 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 KBTBD3Q8NAB2 608 aa12.2□□□□□ -0.46
CD44-207ENST00000425428 SALL1Q9NSC2 1324 aa12.19□□□□□ -0.46
CD44-207ENST00000425428 IRS2Q9Y4H2 1338 aa12.19□□□□□ -0.46
CD44-207ENST00000425428 SNED1Q8TER0 1413 aa12.19□□□□□ -0.46
CD44-207ENST00000425428 SLC51AQ86UW1 340 aa12.19□□□□□ -0.46
CD44-207ENST00000425428 CYP2E1P05181 493 aaPredicted RBP12.18□□□□□ -0.46
CD44-207ENST00000425428 SCARF1Q14162 830 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 NAA16Q6N069 864 aaPredicted RBP12.18□□□□□ -0.46
CD44-207ENST00000425428 CERS3Q8IU89 383 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 ZC3H4Q9UPT8 1303 aaKnown RBP12.18□□□□□ -0.46
CD44-207ENST00000425428 RFX7Q2KHR2 1363 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 RAD17O75943 681 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 RPS12P25398 132 aaKnown RBP12.18□□□□□ -0.46
CD44-207ENST00000425428 SLC9C2Q5TAH2 1124 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 C9orf131Q5VYM1 1079 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 KIAA1211Q6ZU35 1233 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 SKAP1Q86WV1 359 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 AGBL3Q8NEM8 1001 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 JAG2Q9Y219 1238 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 GJA3Q9Y6H8 435 aa12.18□□□□□ -0.46
CD44-207ENST00000425428 PSME4Q14997 1843 aa12.17□□□□□ -0.46
CD44-207ENST00000425428 RNF113AO15541 343 aaKnown RBP12.17□□□□□ -0.46
CD44-207ENST00000425428 BAG3O95817 575 aa12.17□□□□□ -0.46
CD44-207ENST00000425428 GSPT1P15170 499 aaKnown RBP12.17□□□□□ -0.46
CD44-207ENST00000425428 RSBN1LQ6PCB5 846 aaPredicted RBP12.17□□□□□ -0.46
CD44-207ENST00000425428 PI16Q6UXB8 463 aa12.17□□□□□ -0.46
CD44-207ENST00000425428 TBC1D9Q6ZT07 1266 aa12.17□□□□□ -0.46
CD44-207ENST00000425428 NDUFB9Q9Y6M9 179 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms