RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ZNF827Q17R98 1081 aa31.58■■■□□ 2.65
LDB1-202ENST00000425280 ANKRD2Q9GZV1 360 aa31.58■■■□□ 2.65
LDB1-202ENST00000425280 SH2B1Q9NRF2 756 aaPredicted RBP31.58■■■□□ 2.65
LDB1-202ENST00000425280 TTLL5Q6EMB2 1281 aa31.57■■■□□ 2.64
LDB1-202ENST00000425280 ZDHHC9Q9Y397 364 aa31.57■■■□□ 2.64
LDB1-202ENST00000425280 MAP3K12Q12852 859 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 CLEC17AQ6ZS10 378 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 GNL3LQ9NVN8 582 aaKnown RBP31.56■■■□□ 2.64
LDB1-202ENST00000425280 TOB2Q14106 344 aaPredicted RBP31.56■■■□□ 2.64
LDB1-202ENST00000425280 ANKRD1Q15327 319 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 AKT1S1Q96B36 256 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 CTNNA3Q9UI47 895 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 TPCN1Q9ULQ1 816 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 IQSEC3Q9UPP2 1182 aaPredicted RBP31.56■■■□□ 2.64
LDB1-202ENST00000425280 LAMA4Q16363 1823 aa31.56■■■□□ 2.64
LDB1-202ENST00000425280 ME3Q16798 604 aa31.55■■■□□ 2.64
LDB1-202ENST00000425280 CAVIN4Q5BKX8 364 aa31.55■■■□□ 2.64
LDB1-202ENST00000425280 FAM84BQ96KN1 310 aaPredicted RBP31.55■■■□□ 2.64
LDB1-202ENST00000425280 TFCP2L1Q9NZI6 479 aa31.55■■■□□ 2.64
LDB1-202ENST00000425280 DDR1Q08345 913 aa31.55■■■□□ 2.64
LDB1-202ENST00000425280 GRAPQ13588 217 aa31.55■■■□□ 2.64
LDB1-202ENST00000425280 GRAPLQ8TC17 118 aaPredicted RBP31.55■■■□□ 2.64
LDB1-202ENST00000425280 FGAP02671 866 aa31.54■■■□□ 2.64
LDB1-202ENST00000425280 ST5P78524 1137 aa31.54■■■□□ 2.64
LDB1-202ENST00000425280 MAGEB6Q8N7X4 407 aa31.54■■■□□ 2.64
LDB1-202ENST00000425280 RGS17Q9UGC6 210 aaPredicted RBP31.54■■■□□ 2.64
LDB1-202ENST00000425280 DDX11L8A8MPP1 907 aa31.53■■■□□ 2.64
LDB1-202ENST00000425280 COL1A1P02452 1464 aaPredicted RBP31.53■■■□□ 2.64
LDB1-202ENST00000425280 E7EWF7 191 aa31.53■■■□□ 2.64
LDB1-202ENST00000425280 FBXO33Q7Z6M2 555 aa31.53■■■□□ 2.64
LDB1-202ENST00000425280 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.53■■■□□ 2.64
LDB1-202ENST00000425280 POLRMTO00411 1230 aaKnown RBP31.52■■■□□ 2.64
LDB1-202ENST00000425280 HMGB1P09429 215 aaKnown RBP31.52■■■□□ 2.64
LDB1-202ENST00000425280 KLRK1P26718 216 aa31.52■■■□□ 2.64
LDB1-202ENST00000425280 CCDC83Q8IWF9 413 aa31.52■■■□□ 2.64
LDB1-202ENST00000425280 ST3GAL1Q11201 340 aa31.52■■■□□ 2.64
LDB1-202ENST00000425280 CRY2Q49AN0 593 aa31.52■■■□□ 2.64
LDB1-202ENST00000425280 VPS37DQ86XT2 251 aa31.52■■■□□ 2.64
LDB1-202ENST00000425280 TNS1Q9HBL0 1735 aaKnown RBP31.51■■■□□ 2.63
LDB1-202ENST00000425280 BAG4O95429 457 aaKnown RBP31.5■■■□□ 2.63
LDB1-202ENST00000425280 IMMTQ16891 758 aaKnown RBP31.5■■■□□ 2.63
LDB1-202ENST00000425280 RPGRQ92834 1020 aaKnown RBP31.5■■■□□ 2.63
LDB1-202ENST00000425280 DHX32Q7L7V1 743 aaKnown RBP31.49■■■□□ 2.63
LDB1-202ENST00000425280 COL23A1Q86Y22 540 aaPredicted RBP31.49■■■□□ 2.63
LDB1-202ENST00000425280 STRBPQ96SI9 672 aaKnown RBP31.49■■■□□ 2.63
LDB1-202ENST00000425280 LRP2BPQ9P2M1 347 aa31.49■■■□□ 2.63
LDB1-202ENST00000425280 BRD1O95696 1058 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 Q6ZUG5 572 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 NECAB1Q8N987 351 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 AIDAQ96BJ3 306 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 DENND2AQ9ULE3 1009 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 POTEAQ6S8J7 498 aa31.48■■■□□ 2.63
LDB1-202ENST00000425280 HAND2P61296 217 aa31.47■■■□□ 2.63
LDB1-202ENST00000425280 SLC51AQ86UW1 340 aa31.47■■■□□ 2.63
LDB1-202ENST00000425280 SMC3Q9UQE7 1217 aa31.47■■■□□ 2.63
LDB1-202ENST00000425280 EXOSC10Q01780 885 aaKnown RBP31.47■■■□□ 2.63
LDB1-202ENST00000425280 IRS2Q9Y4H2 1338 aa31.46■■■□□ 2.63
LDB1-202ENST00000425280 SEMA3EO15041 775 aa31.46■■■□□ 2.63
LDB1-202ENST00000425280 MBD4O95243 580 aa31.45■■■□□ 2.63
LDB1-202ENST00000425280 HIBADHP31937 336 aaKnown RBP31.45■■■□□ 2.63
LDB1-202ENST00000425280 LRRC2Q9BYS8 371 aa31.45■■■□□ 2.62
LDB1-202ENST00000425280 ABCF2Q9UG63 623 aa31.45■■■□□ 2.62
LDB1-202ENST00000425280 RBM17Q96I25 401 aaKnown RBP31.44■■■□□ 2.62
LDB1-202ENST00000425280 ZNF213O14771 459 aa31.44■■■□□ 2.62
LDB1-202ENST00000425280 NLGN1Q8N2Q7 840 aa31.44■■■□□ 2.62
LDB1-202ENST00000425280 ARMT1Q9H993 441 aa31.44■■■□□ 2.62
LDB1-202ENST00000425280 ANKIB1Q9P2G1 1089 aa31.44■■■□□ 2.62
LDB1-202ENST00000425280 RGPD3A6NKT7 1758 aaPredicted RBP31.43■■■□□ 2.62
LDB1-202ENST00000425280 RGPD4Q7Z3J3 1758 aa31.43■■■□□ 2.62
LDB1-202ENST00000425280 APPP05067 770 aa31.43■■■□□ 2.62
LDB1-202ENST00000425280 FOXD4L5Q5VV16 416 aaPredicted RBP31.43■■■□□ 2.62
LDB1-202ENST00000425280 TXNRD3Q86VQ6 643 aa31.43■■■□□ 2.62
LDB1-202ENST00000425280 FOXD4L4Q8WXT5 416 aaPredicted RBP31.43■■■□□ 2.62
LDB1-202ENST00000425280 FLAD1Q8NFF5 587 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 LEMD3Q9Y2U8 911 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 MYH13Q9UKX3 1938 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 PDS5AQ29RF7 1337 aaKnown RBP31.42■■■□□ 2.62
LDB1-202ENST00000425280 KLRG2A4D1S0 409 aaPredicted RBP31.42■■■□□ 2.62
LDB1-202ENST00000425280 TRAK2O60296 914 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 ALX1Q15699 326 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 BRF1Q92994 677 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 RAI14Q9P0K7 980 aa31.42■■■□□ 2.62
LDB1-202ENST00000425280 XDHP47989 1333 aa31.41■■■□□ 2.62
LDB1-202ENST00000425280 PATL2C9JE40 543 aaKnown RBP31.41■■■□□ 2.62
LDB1-202ENST00000425280 GJB2P29033 226 aa31.41■■■□□ 2.62
LDB1-202ENST00000425280 AGXT2Q9BYV1 514 aa31.41■■■□□ 2.62
LDB1-202ENST00000425280 HOXA10P31260 410 aaPredicted RBP31.4■■■□□ 2.62
LDB1-202ENST00000425280 NBPF3Q9H094 633 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 PNPLA7Q6ZV29 1317 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 PTMSP20962 102 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 CYP7A1P22680 504 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 FGD1P98174 961 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 LCORLQ8N3X6 602 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 ZMYM6O95789 1325 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 WDR33Q9C0J8 1336 aaKnown RBP31.4■■■□□ 2.62
LDB1-202ENST00000425280 CACNA1SQ13698 1873 aa31.4■■■□□ 2.62
LDB1-202ENST00000425280 GOLGA6L22H0YM25 854 aa31.39■■■□□ 2.62
LDB1-202ENST00000425280 STK3Q13188 491 aa31.39■■■□□ 2.62
LDB1-202ENST00000425280 EPB41L4AQ9HCS5 686 aaPredicted RBP31.39■■■□□ 2.62
LDB1-202ENST00000425280 NRXN2Q9P2S2 1712 aa31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms