RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 LRP10Q7Z4F1 713 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 FCHSD1Q86WN1 690 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 IFNL2Q8IZJ0 200 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 JMYQ8N9B5 988 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 DCAF5Q96JK2 942 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 L2HGDHQ9H9P8 463 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 CCDC66A2RUB6 948 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 PRAMEF22A3QJZ6 481 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 SPDYE4A6NLX3 237 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 CASP7P55210 303 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 APOBRQ0VD83 1088 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 UBE3BQ7Z3V4 1068 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 LINC00301Q8NCQ3 95 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 ZNF592Q92610 1267 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 NOL10Q9BSC4 688 aaKnown RBP12.8□□□□□ -0.36
LIMS1-207ENST00000422797 FAM53CQ9NYF3 392 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 PCDHA7Q9UN72 937 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 LAMA4Q16363 1823 aa12.8□□□□□ -0.36
LIMS1-207ENST00000422797 A0A087WZG4 1122 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 SLC3A2P08195 630 aaKnown RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 HSPD1P10809 573 aaKnown RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 MYL6BP14649 208 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 COL9A3Q14050 684 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 IMMTQ16891 758 aaKnown RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 CCDC129Q6ZRS4 1044 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 PHLPP2Q6ZVD8 1323 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 DDX46Q7L014 1031 aaKnown RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 FILIP1Q7Z7B0 1213 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 KLHDC4Q8TBB5 520 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 EDC3Q96F86 508 aaKnown RBP12.79□□□□□ -0.36
LIMS1-207ENST00000422797 C8orf76Q96K31 380 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 PKD1L3Q7Z443 1732 aa12.79□□□□□ -0.36
LIMS1-207ENST00000422797 MAP3K15Q6ZN16 1313 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 GOLGA6L9A6NEM1 432 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 H7C1W4 665 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 SPTLC2O15270 562 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 CDKL5O76039 1030 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 CMA1P23946 247 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 BMS1Q14692 1282 aaKnown RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 SYNE3Q6ZMZ3 975 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 ZNF771Q7L3S4 317 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 ELOA2Q8IYF1 753 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 ARGLU1Q9NWB6 273 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 ZNF215Q9UL58 517 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 USP16Q9Y5T5 823 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 MAST3O60307 1309 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 GOLIM4O00461 696 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 IFIT1P09914 478 aaKnown RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 CEBPZQ03701 1054 aaKnown RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 FBXO18Q8NFZ0 1043 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 CWC25Q9NXE8 425 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 ZHX1Q9UKY1 873 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-207ENST00000422797 AKAP2Q9Y2D5 859 aa12.78□□□□□ -0.36
LIMS1-207ENST00000422797 FAM237AA0A1B0GTK4 181 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 EYA2O00167 538 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 ATP8B1O43520 1251 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 SMC2O95347 1197 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 MYSM1Q5VVJ2 828 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 CPLX2Q6PUV4 134 aaKnown RBP12.77□□□□□ -0.37
LIMS1-207ENST00000422797 LMBR1LQ6UX01 489 aa12.77□□□□□ -0.37
LIMS1-207ENST00000422797 ZNF496Q96IT1 587 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-207ENST00000422797 SEC62Q99442 399 aaKnown RBP12.77□□□□□ -0.37
LIMS1-207ENST00000422797 HOOK1Q9UJC3 728 aaKnown RBP12.77□□□□□ -0.37
LIMS1-207ENST00000422797 ALS2Q96Q42 1657 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 CPLX1O14810 134 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 ZSCAN12O43309 604 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 PPP6R2O75170 966 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 CCT2P78371 535 aaKnown RBP12.76□□□□□ -0.37
LIMS1-207ENST00000422797 FOXO4P98177 505 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 ATG9AQ7Z3C6 839 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 NBPF11Q86T75 865 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 CCDC191Q8NCU4 936 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 NCOA7Q8NI08 942 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 PPP1R13BQ96KQ4 1090 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 LRRC2Q9BYS8 371 aa12.76□□□□□ -0.37
LIMS1-207ENST00000422797 CPDO75976 1380 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 USP27XA6NNY8 438 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 DTNBO60941 627 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 H2AFXP16104 143 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 NDUFA8P51970 172 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 KMT5BQ4FZB7 885 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 CCDC93Q567U6 631 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 CCDC158Q5M9N0 1113 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 ANO1Q5XXA6 986 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 TMC6Q7Z403 805 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 RALYLQ86SE5 291 aaKnown RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 NEUROD6Q96NK8 337 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 XPO4Q9C0E2 1151 aaKnown RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 BCL11BQ9C0K0 894 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 ORC3Q9UBD5 711 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 TUBE1Q9UJT0 475 aa12.75□□□□□ -0.37
LIMS1-207ENST00000422797 NAP1L2Q9ULW6 460 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 DDX60Q8IY21 1712 aaKnown RBP12.75□□□□□ -0.37
LIMS1-207ENST00000422797 GLI3P10071 1580 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 NUP188Q5SRE5 1749 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 GOLGA8BA8MQT2 603 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 ZNF202O95125 648 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 FDPSP14324 419 aaKnown RBP12.74□□□□□ -0.37
LIMS1-207ENST00000422797 ETF1P62495 437 aaKnown RBP12.74□□□□□ -0.37
LIMS1-207ENST00000422797 MYL5Q02045 173 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms