RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ZNF496Q96IT1 587 aaPredicted RBP19.71■□□□□ 0.75
PHRF1-202ENST00000413872 KRT13P13646 458 aa19.71■□□□□ 0.75
PHRF1-202ENST00000413872 EIF4A1P60842 406 aaKnown RBP19.71■□□□□ 0.75
PHRF1-202ENST00000413872 RUFY3Q7L099 469 aa19.71■□□□□ 0.75
PHRF1-202ENST00000413872 TSPYL1Q9H0U9 437 aa19.71■□□□□ 0.75
PHRF1-202ENST00000413872 N4BP3O15049 544 aa19.71■□□□□ 0.75
PHRF1-202ENST00000413872 ENOX2Q16206 610 aaKnown RBP19.71■□□□□ 0.75
PHRF1-202ENST00000413872 RRAGBQ5VZM2 374 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 TRMT1LQ7Z2T5 733 aaKnown RBP19.7■□□□□ 0.74
PHRF1-202ENST00000413872 LUZP1Q86V48 1076 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 CENPHQ9H3R5 247 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 USP25Q9UHP3 1055 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 KDM5DQ9BY66 1539 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 PARP1P09874 1014 aaKnown RBP19.7■□□□□ 0.74
PHRF1-202ENST00000413872 ATL3Q6DD88 541 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 PDCL2Q8N4E4 241 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 CPLX3Q8WVH0 158 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 PPFIA3O75145 1194 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 USP8P40818 1118 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 TNNQ9UQP3 1299 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 MBD5Q9P267 1494 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 CCDC66A2RUB6 948 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 IFI16Q16666 785 aaKnown RBP19.7■□□□□ 0.74
PHRF1-202ENST00000413872 DPP8Q6V1X1 898 aaPredicted RBP19.7■□□□□ 0.74
PHRF1-202ENST00000413872 XAGE2Q96GT9 111 aa19.7■□□□□ 0.74
PHRF1-202ENST00000413872 SPTLC2O15270 562 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 TMC6Q7Z403 805 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 CRACR2AQ9BSW2 395 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 GLT8D2Q9H1C3 349 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 KIF24Q5T7B8 1368 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 USP19O94966 1318 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 ALDH1B1P30837 517 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.69■□□□□ 0.741e-7■■■■□ 21.8
PHRF1-202ENST00000413872 TBC1D22AQ8WUA7 517 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.69■□□□□ 0.741e-7■□□□□ 10.8
PHRF1-202ENST00000413872 NPHP4O75161 1426 aaPredicted RBP19.69■□□□□ 0.74
PHRF1-202ENST00000413872 TIMM10P62072 90 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 TAX1BP1Q86VP1 789 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 EHBP1Q8NDI1 1231 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 DRC1Q96MC2 740 aa19.69■□□□□ 0.74
PHRF1-202ENST00000413872 NAA15Q9BXJ9 866 aaKnown RBP19.69■□□□□ 0.74
PHRF1-202ENST00000413872 GOLGA6L7A0A1B0GV03 622 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 TBC1D5Q92609 795 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 AK2P54819 239 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 TMEM94Q12767 1356 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 EIF6P56537 245 aaKnown RBP19.68■□□□□ 0.74
PHRF1-202ENST00000413872 ASIC1P78348 528 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 GCC2Q8IWJ2 1684 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 NCBP1Q09161 790 aaKnown RBP19.68■□□□□ 0.74
PHRF1-202ENST00000413872 TAOK3Q9H2K8 898 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 ARHGEF10LQ9HCE6 1279 aa19.68■□□□□ 0.74
PHRF1-202ENST00000413872 PHKG2P15735 406 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 PTPDC1A2A3K4 754 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 APOBRQ0VD83 1088 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 TCIRG1Q13488 830 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 PLS1Q14651 629 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 FERMT1Q9BQL6 677 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 DBNDD2Q9BQY9 259 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 FAM135BQ49AJ0 1406 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 ZMYM4Q5VZL5 1548 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 URI1O94763 535 aaPredicted RBP19.67■□□□□ 0.74
PHRF1-202ENST00000413872 SPAG5Q96R06 1193 aa19.67■□□□□ 0.74
PHRF1-202ENST00000413872 CTNNA2P26232 953 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 AFMP43652 599 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 NLRP1Q9C000 1473 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 KIAA0754O94854 1291 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 HOOK3Q86VS8 718 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 APBA3O96018 575 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 RBM10P98175 930 aaKnown RBP19.66■□□□□ 0.74
PHRF1-202ENST00000413872 PPP2R5BQ15173 497 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 PICK1Q9NRD5 415 aa19.66■□□□□ 0.74
PHRF1-202ENST00000413872 KDM5AP29375 1690 aaKnown RBP19.65■□□□□ 0.74
PHRF1-202ENST00000413872 TMCO3Q6UWJ1 677 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 LARGE2Q8N3Y3 721 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 KBTBD3Q8NAB2 608 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 PLVAPQ9BX97 442 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 UQCRHLA0A096LP55 91 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 UQCRHP07919 91 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 SUCLG2Q96I99 432 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 IMPG2Q9BZV3 1241 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 DDX17Q92841 729 aaKnown RBP19.65■□□□□ 0.74
PHRF1-202ENST00000413872 AATKQ6ZMQ8 1374 aa19.65■□□□□ 0.74
PHRF1-202ENST00000413872 DTHD1Q6ZMT9 781 aa19.64■□□□□ 0.74
PHRF1-202ENST00000413872 GSTTP1A0A1W2PQM5 241 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 AKR1B10O60218 316 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 HS2ST1Q7LGA3 356 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 CNPY2Q9Y2B0 182 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 CCDC102AQ96A19 550 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 GJA3Q9Y6H8 435 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 BICDL2A1A5D9 508 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 POTEB2H3BUK9 544 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 UGGT1Q9NYU2 1555 aa19.64■□□□□ 0.73
PHRF1-202ENST00000413872 PHACTR2O75167 634 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 ADCY5O95622 1261 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 LRSAM1Q6UWE0 723 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 USP26Q9BXU7 913 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 TMOD4Q9NZQ9 345 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 FAM193AP78312 1265 aa19.63■□□□□ 0.73
PHRF1-202ENST00000413872 CTNNBL1Q8WYA6 563 aaPredicted RBP19.63■□□□□ 0.73
PHRF1-202ENST00000413872 SPDYE4A6NLX3 237 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms