RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 RBSNQ9H1K0 784 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 DDX19AQ9NUU7 478 aaKnown RBP12.93□□□□□ -0.34
PTPRF-204ENST00000412568 MAP3K15Q6ZN16 1313 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 GADD45BO75293 160 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-204ENST00000412568 HIBADHP31937 336 aaKnown RBP12.93□□□□□ -0.34
PTPRF-204ENST00000412568 MSL1Q68DK7 614 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 LMBRD1Q9NUN5 540 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 ADGRB1O14514 1584 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 POLR1AO95602 1720 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF76P36508 570 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 AOX1Q06278 1338 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 FILIP1LQ4L180 1135 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 SPATA5Q8NB90 893 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 PHKBQ93100 1093 aa12.93□□□□□ -0.34
PTPRF-204ENST00000412568 LDHBP07195 334 aaKnown RBP12.92□□□□□ -0.34
PTPRF-204ENST00000412568 EPS15P42566 896 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 CCDC102BQ68D86 513 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 OFD1O75665 1012 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 PCCAP05165 728 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-204ENST00000412568 ZSCAN16Q9H4T2 348 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-204ENST00000412568 STAP2Q9UGK3 403 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 CLCN1P35523 988 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 RRAGDQ9NQL2 400 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-204ENST00000412568 ANO10Q9NW15 660 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 HEG1Q9ULI3 1381 aa12.92□□□□□ -0.34
PTPRF-204ENST00000412568 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
PTPRF-204ENST00000412568 CDC37L1Q7L3B6 337 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 CMTR1Q8N1G2 835 aaKnown RBP12.91□□□□□ -0.34
PTPRF-204ENST00000412568 MNS1Q8NEH6 495 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 PTCH1Q13635 1447 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 MYO3AQ8NEV4 1616 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 FRMPD1Q5SYB0 1578 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 AFMP43652 599 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 EIF6P56537 245 aaKnown RBP12.91□□□□□ -0.34
PTPRF-204ENST00000412568 TEX35Q5T0J7 233 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 TANGO6Q9C0B7 1094 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 DNAJC25Q9H1X3 360 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 MAGEC2Q9UBF1 373 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-204ENST00000412568 SDR42E1Q8WUS8 393 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 CPLX3Q8WVH0 158 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 CNNM2Q9H8M5 875 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 PRDM10Q9NQV6 1147 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 TPCN1Q9ULQ1 816 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 E7EWF7 191 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 KCNQ2O43526 872 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 OSBPL3Q9H4L5 887 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 CEP131Q9UPN4 1083 aa12.91□□□□□ -0.34
PTPRF-204ENST00000412568 HSPD1P10809 573 aaKnown RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 GPS2Q13227 327 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 ANO6Q4KMQ2 910 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 RBM26Q5T8P6 1007 aaKnown RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 HEATR3Q7Z4Q2 680 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 ZNF804AQ7Z570 1209 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 A0A1B0GVL5 298 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 GAS2L3Q86XJ1 694 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 SLF2Q8IX21 1173 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 ERCC4Q92889 916 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 TRMT1Q9NXH9 659 aaKnown RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 SRP68Q9UHB9 627 aaKnown RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 USP31Q70CQ4 1352 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 KIF5BP33176 963 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 HAUS7Q99871 368 aa12.9□□□□□ -0.34
PTPRF-204ENST00000412568 LSG1Q9H089 658 aaKnown RBP12.9□□□□□ -0.34
PTPRF-204ENST00000412568 SYKP43405 635 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 ZMYND15Q9H091 742 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 TTC12Q9H892 705 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-204ENST00000412568 ATG3Q9NT62 314 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 NBPF26B4DH59 902 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 FGAP02671 866 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 NBPF14Q5TI25 921 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 NBPF10Q6P3W6 841 aaKnown RBP12.89□□□□□ -0.35
PTPRF-204ENST00000412568 NBPF15Q8N660 670 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 UBE2Q2Q8WVN8 375 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 TMEM63CQ9P1W3 806 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 CLIP2Q9UDT6 1046 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 TRIM37O94972 964 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 PDE8BO95263 885 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 BRD1O95696 1058 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 APBA3O96018 575 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 IDEP14735 1019 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 PPFIBP1Q86W92 1011 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 PI4K2BQ8TCG2 481 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 CEP89Q96ST8 783 aa12.89□□□□□ -0.35
PTPRF-204ENST00000412568 SPTLC2O15270 562 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 POLA2Q14181 598 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 FAM196AQ6ZSG2 479 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 PARP3Q9Y6F1 533 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 C1orf167Q5SNV9 1468 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 PDE6AP16499 860 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 CHRNDQ07001 517 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 SPECC1Q5M775 1068 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 CYP21A2P08686 494 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 CCDC112Q8NEF3 446 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 ANKRD2Q9GZV1 360 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 DENND2AQ9ULE3 1009 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 NRXN1Q9ULB1 1477 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 OVOS2A0A0J9YW53 1432 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 CHGBP05060 677 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 ADD1P35611 737 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms