RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CDC5LQ99459 802 aaKnown RBP16.07■□□□□ 0.16
LIMS1-205ENST00000410093 MPHOSPH8Q99549 860 aa16.07■□□□□ 0.16
LIMS1-205ENST00000410093 FHDC1Q9C0D6 1143 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-205ENST00000410093 MTMR6Q9Y217 621 aa16.07■□□□□ 0.16
LIMS1-205ENST00000410093 LARGE1O95461 756 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 FGFR2P21802 821 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 ADORA1P30542 326 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 UBE2HP62256 183 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 HMGN5P82970 282 aaKnown RBP16.06■□□□□ 0.16
LIMS1-205ENST00000410093 SUSD4Q5VX71 490 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 GPT2Q8TD30 523 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 DOCK2Q92608 1830 aa16.06■□□□□ 0.16
LIMS1-205ENST00000410093 IGHMBP2P38935 993 aaKnown RBP16.05■□□□□ 0.16
LIMS1-205ENST00000410093 FGD1P98174 961 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 EXOSC10Q01780 885 aaKnown RBP16.05■□□□□ 0.16
LIMS1-205ENST00000410093 ITPK1Q13572 414 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 CCDC129Q6ZRS4 1044 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 Q6ZUG5 572 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 ZNF274Q96GC6 653 aaPredicted RBP16.05■□□□□ 0.16
LIMS1-205ENST00000410093 SGIP1Q9BQI5 828 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 NDUFB9Q9Y6M9 179 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 SCN7AQ01118 1682 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 ZMYM6O95789 1325 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 QSER1Q2KHR3 1735 aa16.05■□□□□ 0.16
LIMS1-205ENST00000410093 PFKFB2O60825 505 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 WASHC4Q2M389 1173 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 LRSAM1Q6UWE0 723 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 SYT17Q9BSW7 474 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 NIP7Q9Y221 180 aaKnown RBP eCLIP16.04■□□□□ 0.16
LIMS1-205ENST00000410093 E7EWF7 191 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 NTSR2O95665 410 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 ADD2P35612 726 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 ZAP70P43403 619 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 EVCP57679 992 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 USP48Q86UV5 1035 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 LINC00116Q8NCU8 138 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 OSBP2Q969R2 916 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 ZSCAN16Q9H4T2 348 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-205ENST00000410093 BRPF3Q9ULD4 1205 aa16.04■□□□□ 0.16
LIMS1-205ENST00000410093 ELP1O95163 1332 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.03■□□□□ 0.16
LIMS1-205ENST00000410093 GNPATO15228 680 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 MCAMP43121 646 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 KRT85P78386 507 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 ST3GAL1Q11201 340 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 CCDC102BQ68D86 513 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 SYNE4Q8N205 404 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 FAM43AQ8N2R8 423 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 CCDC85AQ96PX6 553 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-205ENST00000410093 NYXQ9GZU5 481 aa16.03■□□□□ 0.16
LIMS1-205ENST00000410093 SCAND2PQ9GZW5 306 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-205ENST00000410093 M0R2C6 588 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 DHX16O60231 1041 aaKnown RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 NASPP49321 788 aaPredicted RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 CCDC173Q0VFZ6 552 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 SF3B3Q15393 1217 aaKnown RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 FOXD4L5Q5VV16 416 aaPredicted RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 MSL1Q68DK7 614 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 ATL3Q6DD88 541 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 TMED8Q6PL24 325 aaPredicted RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 GAS2L3Q86XJ1 694 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 NECAB1Q8N987 351 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 SMARCC2Q8TAQ2 1214 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 FOXD4L4Q8WXT5 416 aaPredicted RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 RTCBQ9Y3I0 505 aaKnown RBP16.02■□□□□ 0.15
LIMS1-205ENST00000410093 C4BP0C0L5 1744 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 CARMIL3Q8ND23 1372 aa16.02■□□□□ 0.15
LIMS1-205ENST00000410093 ZBTB22O15209 634 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 IGSF3O75054 1194 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 MCM5P33992 734 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 MAP3K12Q12852 859 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 ALX1Q15699 326 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 SLC10A5Q5PT55 438 aa16.01■□□□□ 0.15
LIMS1-205ENST00000410093 TAF1LQ8IZX4 1826 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 VPS37CA5D8V6 355 aaPredicted RBP16■□□□□ 0.15
LIMS1-205ENST00000410093 ZNF213O14771 459 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 GPAA1O43292 621 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 GNAT2P19087 354 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 SCARF1Q14162 830 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 CCDC183Q5T5S1 534 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 NAA16Q6N069 864 aaPredicted RBP16■□□□□ 0.15
LIMS1-205ENST00000410093 STOX1Q6ZVD7 989 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 FAM184AQ8NB25 1140 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 NCOA7Q8NI08 942 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 LARP6Q9BRS8 491 aaKnown RBP16■□□□□ 0.15
LIMS1-205ENST00000410093 TMEM63CQ9P1W3 806 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 TAF6LQ9Y6J9 622 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 COL24A1Q17RW2 1714 aa16■□□□□ 0.15
LIMS1-205ENST00000410093 TRDNQ13061 729 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 TRAPPC3LQ5T215 181 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 SLC9C2Q5TAH2 1124 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 SPATA5Q8NB90 893 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 BRF1Q92994 677 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 A0A1B0GUL6 1792 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 RPS6KA4O75676 772 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 FGAP02671 866 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
LIMS1-205ENST00000410093 RALYLQ86SE5 291 aaKnown RBP15.99■□□□□ 0.15
LIMS1-205ENST00000410093 PPP1R9BQ96SB3 815 aa15.99■□□□□ 0.15
LIMS1-205ENST00000410093 GNL3LQ9NVN8 582 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms