RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PPP4R1Q8TF05 950 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 PPANQ9NQ55 473 aaKnown RBP8.84□□□□□ -0.99
SYNE1-210ENST00000409694 ANKFY1Q9P2R3 1169 aa8.84□□□□□ -0.99
SYNE1-210ENST00000409694 ZSCAN23Q3MJ62 389 aa8.84□□□□□ -1
SYNE1-210ENST00000409694 DNAI1Q9UI46 699 aa8.84□□□□□ -1
SYNE1-210ENST00000409694 BIN1O00499 593 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 NFE2L2Q16236 605 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 CDAN1Q8IWY9 1227 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 TNPO1Q92973 898 aaKnown RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 DRC3Q9H069 523 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 IFIT1BQ5T764 474 aaKnown RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 NUTM1Q86Y26 1132 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 ZSWIM4Q9H7M6 989 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 PARP2Q9UGN5 583 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 ZNF131P52739 623 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 RBM26Q5T8P6 1007 aaKnown RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 TERF1P54274 439 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 IFT81Q8WYA0 676 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 TMOD4Q9NZQ9 345 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 LARSQ9P2J5 1176 aaKnown RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 ST5P78524 1137 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 WTAPQ15007 396 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 TAF7Q15545 349 aaPredicted RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 NBPF6Q5VWK0 638 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 NBPF4Q96M43 638 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 TEX13AQ9BXU3 409 aaPredicted RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 TSKSQ9UJT2 592 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 INPP5BP32019 993 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 ASIC1P78348 528 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 GABPAQ06546 454 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 HSP90AA5PQ58FG0 334 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 FAM8A1Q9UBU6 413 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 EPB41P11171 864 aaKnown RBP8.83□□□□□ -1
SYNE1-210ENST00000409694 RASA3Q14644 834 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 ANO6Q4KMQ2 910 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 PHLDB3Q6NSJ2 640 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 SLC26A6Q9BXS9 759 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 PPP1R12CQ9BZL4 782 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 NCOA2Q15596 1464 aa8.83□□□□□ -1
SYNE1-210ENST00000409694 SYCE1Q8N0S2 351 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 THEMISQ8N1K5 641 aaPredicted RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 GJC1P36383 396 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 MRPS27Q92552 414 aaKnown RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 P3H4Q92791 437 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 CCDC124Q96CT7 223 aaKnown RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 GAPVD1Q14C86 1478 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 GOLGA8CPA6NN73 597 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 PLCB4Q15147 1175 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 NOLC1Q14978 699 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-210ENST00000409694 PROSER2Q86WR7 435 aaPredicted RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 NOX5Q96PH1 765 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 CDK19Q9BWU1 502 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 WDR70Q9NW82 654 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 ORC6Q9Y5N6 252 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 USP16Q9Y5T5 823 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 KIF14Q15058 1648 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 NAA16Q6N069 864 aaPredicted RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 ESR2Q92731 530 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 COG7P83436 770 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 ATL3Q6DD88 541 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 IQCDQ96DY2 449 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 UAP1Q16222 522 aaPredicted RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 ZC3H15Q8WU90 426 aaKnown RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 ZC4H2Q9NQZ6 224 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 PFDN6O15212 129 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 UQCRFS1P1P0C7P4 283 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 PRDM11Q9NQV5 511 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 GNAT2P19087 354 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 CCT6AP40227 531 aaKnown RBP8.82□□□□□ -1
SYNE1-210ENST00000409694 MUM1Q2TAK8 710 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 IL1RAPL2Q9NP60 686 aa8.82□□□□□ -1
SYNE1-210ENST00000409694 RNF8O76064 485 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 ZSCAN22P10073 491 aaPredicted RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 SMTNP53814 917 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 NEK1Q96PY6 1258 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 PPFIA3O75145 1194 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 LRPPRCP42704 1394 aaKnown RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 CECR2Q9BXF3 1484 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 BOLA2Q9H3K6 86 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 KRT2P35908 639 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 MAIP1Q8WWC4 291 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 HSPA8P11142 646 aaKnown RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 CDR2Q01850 454 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 BIRC2Q13490 618 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 MICU3Q86XE3 530 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 TMEM57Q8N5G2 664 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 SMIM23A6NLE4 172 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 CCT2P78371 535 aaKnown RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 RTN1Q16799 776 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 PRAM1Q96QH2 718 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 CASKIN1Q8WXD9 1431 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 KRBA2Q6ZNG9 492 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 RRP36Q96EU6 259 aaKnown RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 ORC3Q9UBD5 711 aaPredicted RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 MROH2BQ7Z745 1585 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 CALUO43852 315 aaPredicted RBP8.81□□□□□ -1
SYNE1-210ENST00000409694 PPP1R42Q7Z4L9 355 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 PLCD3Q8N3E9 789 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 PHBP35232 272 aa8.81□□□□□ -1
SYNE1-210ENST00000409694 KIAA1107Q9UPP5 1409 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms