RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NIM1KQ8IY84 436 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 TDRD7Q8NHU6 1098 aaKnown RBP16.3■□□□□ 0.2
LIMS1-204ENST00000409441 GPATCH3Q96I76 525 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 ECE2O60344 883 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 UQCRFS1P1P0C7P4 283 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 PLEKHM2Q8IWE5 1019 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 ZNF512BQ96KM6 892 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-204ENST00000409441 STAP2Q9UGK3 403 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 ZNRF3Q9ULT6 936 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 SALL3Q9BXA9 1300 aa16.29■□□□□ 0.2
LIMS1-204ENST00000409441 ATP5JP18859 108 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 RBM25P49756 843 aaKnown RBP16.28■□□□□ 0.2
LIMS1-204ENST00000409441 PDE1AP54750 535 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 C9orf131Q5VYM1 1079 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 TSHZ3Q63HK5 1081 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 KCNQ5Q9NR82 932 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 TTC41PQ6P2S7 1318 aa16.28■□□□□ 0.2
LIMS1-204ENST00000409441 ARID4AP29374 1257 aaPredicted RBP16.27■□□□□ 0.2
LIMS1-204ENST00000409441 RNF181Q9P0P0 153 aa16.27■□□□□ 0.2
LIMS1-204ENST00000409441 YDJCA8MPS7 323 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 SEMA3EO15041 775 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 CDC45O75419 566 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 RASGRF1Q13972 1273 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 SCARF1Q14162 830 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 BOLA2Q9H3K6 86 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 HMG20BQ9P0W2 317 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 DENND2AQ9ULE3 1009 aa16.27■□□□□ 0.19
LIMS1-204ENST00000409441 ERC2O15083 957 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 MCAMP43121 646 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 GTF2IP78347 998 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 TTC22Q5TAA0 569 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 TTLL5Q6EMB2 1281 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 SPATA5Q8NB90 893 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMS1-204ENST00000409441 OSBPL3Q9H4L5 887 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 SNRKQ9NRH2 765 aa16.26■□□□□ 0.19
LIMS1-204ENST00000409441 COL4A5P29400 1685 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 FZD9O00144 591 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 ZBTB22O15209 634 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 RAD17O75943 681 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 CHAF1AQ13111 956 aaPredicted RBP16.25■□□□□ 0.19
LIMS1-204ENST00000409441 PI16Q6UXB8 463 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 PI4K2BQ8TCG2 481 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 JAG2Q9Y219 1238 aa16.25■□□□□ 0.19
LIMS1-204ENST00000409441 USP17L3A6NCW0 530 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 USP17L4A6NCW7 530 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 GLRX3O76003 335 aaKnown RBP16.24■□□□□ 0.19
LIMS1-204ENST00000409441 CXCL9Q07325 125 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 TBC1D9Q6ZT07 1266 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 USP17L1Q7RTZ2 530 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 FBXW7Q969H0 707 aa16.24■□□□□ 0.19
LIMS1-204ENST00000409441 NPM3O75607 178 aaKnown RBP16.23■□□□□ 0.19
LIMS1-204ENST00000409441 ZAP70P43403 619 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 EIF6P56537 245 aaKnown RBP16.23■□□□□ 0.19
LIMS1-204ENST00000409441 STRIP1Q5VSL9 837 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 HAUS7Q99871 368 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 TBC1D2Q9BYX2 928 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 NDUFB9Q9Y6M9 179 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 FAM205AQ6ZU69 1335 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 ARAP2Q8WZ64 1704 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 GSPT1P15170 499 aaKnown RBP16.23■□□□□ 0.19
LIMS1-204ENST00000409441 WDR66Q8TBY9 1149 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 DNAJC2Q99543 621 aaKnown RBP16.23■□□□□ 0.19
LIMS1-204ENST00000409441 AOX1Q06278 1338 aa16.23■□□□□ 0.19
LIMS1-204ENST00000409441 UTRNP46939 3433 aa16.22■□□□□ 0.19
LIMS1-204ENST00000409441 CYP2E1P05181 493 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-204ENST00000409441 TNIP1Q15025 636 aa16.22■□□□□ 0.19
LIMS1-204ENST00000409441 DACT2Q5SW24 774 aa16.22■□□□□ 0.19
LIMS1-204ENST00000409441 CIAPIN1Q6FI81 312 aa16.22■□□□□ 0.19
LIMS1-204ENST00000409441 PDS5AQ29RF7 1337 aaKnown RBP16.22■□□□□ 0.19
LIMS1-204ENST00000409441 PSMD14O00487 310 aa16.21■□□□□ 0.19
LIMS1-204ENST00000409441 MAP4K4O95819 1239 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-204ENST00000409441 VIL1P09327 827 aaKnown RBP16.21■□□□□ 0.19
LIMS1-204ENST00000409441 MXD3Q9BW11 206 aa16.21■□□□□ 0.19
LIMS1-204ENST00000409441 SBF1O95248 1867 aa16.21■□□□□ 0.19
LIMS1-204ENST00000409441 GOLIM4O00461 696 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 MFSD14BQ5SR56 506 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 TBC1D22AQ8WUA7 517 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 EDC3Q96F86 508 aaKnown RBP16.2■□□□□ 0.18
LIMS1-204ENST00000409441 ANTXR1Q9H6X2 564 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 PAG1Q9NWQ8 432 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 ABCF2Q9UG63 623 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 CCDC88AQ3V6T2 1871 aa16.2■□□□□ 0.18
LIMS1-204ENST00000409441 COL1A1P02452 1464 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-204ENST00000409441 ZNF541Q9H0D2 1346 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 FKBP1AP62942 108 aaKnown RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 NFKBIBQ15653 356 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 CERS5Q8N5B7 392 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 SNX21Q969T3 373 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 GJA3Q9Y6H8 435 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 CHD4Q14839 1912 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 SALL1Q9NSC2 1324 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 TTF1Q15361 905 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 RSBN1LQ6PCB5 846 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 CASC1Q6TDU7 716 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 ZGPATQ8N5A5 531 aaKnown RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 PIH1D3Q9NQM4 214 aaKnown RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 LRP2BPQ9P2M1 347 aa16.19■□□□□ 0.18
LIMS1-204ENST00000409441 ZBTB12Q9Y330 459 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-204ENST00000409441 TRIM6-TRIM34B2RNG4 842 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms