RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 COL5A2P05997 1499 aaPredicted RBP15.07■□□□□ 0
PTPRN-202ENST00000409251 CLCN6P51797 869 aa15.07■□□□□ 0
PTPRN-202ENST00000409251 ST5P78524 1137 aa15.07■□□□□ 0
PTPRN-202ENST00000409251 CHST3Q7LGC8 479 aa15.07■□□□□ 0
PTPRN-202ENST00000409251 FUCA2Q9BTY2 467 aa15.07■□□□□ 0
PTPRN-202ENST00000409251 ARGLU1Q9NWB6 273 aaPredicted RBP15.07■□□□□ 0
PTPRN-202ENST00000409251 CARD6Q9BX69 1037 aa15.07■□□□□ 0
PTPRN-202ENST00000409251 PTPN12Q05209 780 aaKnown RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 SCAND2PQ9GZW5 306 aaPredicted RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 IFNKQ9P0W0 207 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 TRMT112Q9UI30 125 aaKnown RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 TAF6LQ9Y6J9 622 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 MORC2Q9Y6X9 1032 aaPredicted RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 GOLIM4O00461 696 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 GLRX3O76003 335 aaKnown RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 STARD3NLO95772 234 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 RAD51AP2Q09MP3 1159 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 PI16Q6UXB8 463 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 PLEKHA4Q9H4M7 779 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 ERVV-2B6SEH9 535 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 ERO1AQ96HE7 468 aa15.06■□□□□ 0
PTPRN-202ENST00000409251 DBNLQ9UJU6 430 aaKnown RBP15.06■□□□□ 0
PTPRN-202ENST00000409251 IRX3P78415 501 aaPredicted RBP15.05■□□□□ 0
PTPRN-202ENST00000409251 NMIQ13287 307 aaPredicted RBP15.05■□□□□ 0
PTPRN-202ENST00000409251 POLR3DP05423 398 aaPredicted RBP15.05■□□□□ -0
PTPRN-202ENST00000409251 CCDC57Q2TAC2 916 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 DHX37Q8IY37 1157 aaKnown RBP15.05■□□□□ -0
PTPRN-202ENST00000409251 FSIP1Q8NA03 581 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 RABEP2Q9H5N1 569 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 DDX19AQ9NUU7 478 aaKnown RBP15.05■□□□□ -0
PTPRN-202ENST00000409251 IQSEC3Q9UPP2 1182 aaPredicted RBP15.05■□□□□ -0
PTPRN-202ENST00000409251 A0A1B0GVL5 298 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 PDCP20941 246 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 OTUD7BQ6GQQ9 843 aa15.05■□□□□ -0
PTPRN-202ENST00000409251 LRP10Q7Z4F1 713 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 DCCP43146 1447 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 TRPM3Q9HCF6 1732 aaPredicted RBP15.04■□□□□ -0
PTPRN-202ENST00000409251 GPS2Q13227 327 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 LSG1Q9H089 658 aaKnown RBP15.04■□□□□ -0
PTPRN-202ENST00000409251 CPDO75976 1380 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 A0A0D9SFI3 127 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 SERPINC1P01008 464 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 CEP57L1Q8IYX8 460 aa15.04■□□□□ -0
PTPRN-202ENST00000409251 CCDC171Q6TFL3 1326 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 SALL3Q9BXA9 1300 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 OVOS2A0A0G2JMS6 1433 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 MEX3CQ5U5Q3 659 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 PGBD1Q96JS3 809 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 SRRTQ9BXP5 876 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 ZNF446Q9NWS9 450 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 CFAP100Q494V2 611 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 DZIP3Q86Y13 1208 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 CLSTN2Q9H4D0 955 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 OSBPL3Q9H4L5 887 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 PNMA6AP0CW24 399 aaPredicted RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 OAS2P29728 719 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 CREB3L3Q68CJ9 461 aa15.03■□□□□ -0
PTPRN-202ENST00000409251 UTP14AQ9BVJ6 771 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 NCOA5Q9HCD5 579 aaKnown RBP15.03■□□□□ -0
PTPRN-202ENST00000409251 NCAPD2Q15021 1401 aa15.02■□□□□ -0
PTPRN-202ENST00000409251 TNNI3KQ59H18 835 aa15.02■□□□□ -0
PTPRN-202ENST00000409251 ZNF589Q86UQ0 364 aaPredicted RBP15.02■□□□□ -0
PTPRN-202ENST00000409251 FPGT-TNNI3KV9GXZ4 949 aa15.02■□□□□ -0
PTPRN-202ENST00000409251 ADORA1P30542 326 aa15.02□□□□□ -0.01
PTPRN-202ENST00000409251 MARCH10Q8NA82 808 aaPredicted RBP15.02□□□□□ -0.01
PTPRN-202ENST00000409251 SMARCE1Q969G3 411 aa15.02□□□□□ -0.01
PTPRN-202ENST00000409251 CNNM1Q9NRU3 951 aa15.02□□□□□ -0.01
PTPRN-202ENST00000409251 ERC1Q8IUD2 1116 aa15.02□□□□□ -0.01
PTPRN-202ENST00000409251 HDAC5Q9UQL6 1122 aa15.02□□□□□ -0.01
PTPRN-202ENST00000409251 TOM1O60784 492 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 TMEM87AQ8NBN3 555 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 ZSCAN31Q96LW9 406 aaPredicted RBP15.01□□□□□ -0.01
PTPRN-202ENST00000409251 TTC14Q96N46 770 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 STAP2Q9UGK3 403 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 TAF5LO75529 589 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 TPM4P67936 248 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 KARSQ15046 597 aaKnown RBP15.01□□□□□ -0.01
PTPRN-202ENST00000409251 XPO4Q9C0E2 1151 aaKnown RBP15.01□□□□□ -0.01
PTPRN-202ENST00000409251 SH2B1Q9NRF2 756 aaPredicted RBP15.01□□□□□ -0.01
PTPRN-202ENST00000409251 STRCQ7RTU9 1775 aa15.01□□□□□ -0.01
PTPRN-202ENST00000409251 EVCP57679 992 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 GNG11P61952 73 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 PPARDQ03181 441 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 STX1AQ16623 288 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 ZSCAN26Q16670 478 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 WASHC4Q2M389 1173 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 LDHAL6AQ6ZMR3 332 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 PLA2G4DQ86XP0 818 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 CCDC102AQ96A19 550 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 RASSF4Q9H2L5 321 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 GREM2Q9H772 168 aa15□□□□□ -0.01
PTPRN-202ENST00000409251 PUF60Q9UHX1 559 aaKnown RBP15□□□□□ -0.01
PTPRN-202ENST00000409251 RNF20Q5VTR2 975 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 CPLX3Q8WVH0 158 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 DRC1Q96MC2 740 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 VPS18Q9P253 973 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 LCMT1Q9UIC8 334 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 FOXO4P98177 505 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 METTL24Q5JXM2 366 aa14.99□□□□□ -0.01
PTPRN-202ENST00000409251 CEP126Q9P2H0 1117 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms