RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 PTPN12Q05209 780 aaKnown RBP9.65□□□□□ -0.87
SNX13-201ENST00000409076 SCARF1Q14162 830 aa9.65□□□□□ -0.87
SNX13-201ENST00000409076 LDHAL6AQ6ZMR3 332 aa9.65□□□□□ -0.87
SNX13-201ENST00000409076 PCMTD1Q96MG8 357 aaPredicted RBP9.65□□□□□ -0.87
SNX13-201ENST00000409076 KIF24Q5T7B8 1368 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 ALDH1L1O75891 902 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 TPM3P06753 285 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 TDO2P48775 406 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 BBXQ8WY36 941 aaPredicted RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 OSBP2Q969R2 916 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 TFRCP02786 760 aaKnown RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 SMIM5Q71RC9 77 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 DPF2Q92785 391 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 GOLGA8AA7E2F4 631 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 IFIT3O14879 490 aaKnown RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 ZNF202O95125 648 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 METAP2P50579 478 aaKnown RBP eCLIP9.64□□□□□ -0.87
SNX13-201ENST00000409076 MTX1Q13505 466 aa9.64□□□□□ -0.87
SNX13-201ENST00000409076 ENOX2Q16206 610 aaKnown RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 KCTD19Q17RG1 926 aaPredicted RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 IRX2Q9BZI1 471 aaPredicted RBP9.64□□□□□ -0.87
SNX13-201ENST00000409076 RHOXF2BP0C7M4 288 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 ATF3P18847 181 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 MRPS25P82663 173 aaKnown RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 KMT5BQ4FZB7 885 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 RHOXF2Q9BQY4 288 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 FUCA2Q9BTY2 467 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 PUS7LQ9H0K6 701 aaKnown RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 SNRPA1P09661 255 aaKnown RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 PDIA3P30101 505 aaKnown RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 CCT6AP40227 531 aaKnown RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 KCNQ4P56696 695 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 FAM160A1Q05DH4 1040 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 AIDAQ96BJ3 306 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 TRIM34Q9BYJ4 488 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 DIP2CQ9Y2E4 1556 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 GTF2E1P29083 439 aaPredicted RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 DMTNQ08495 405 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 TMEM67Q5HYA8 995 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 CCDC12Q8WUD4 166 aaPredicted RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 DHX58Q96C10 678 aa9.63□□□□□ -0.87
SNX13-201ENST00000409076 METTL22Q9BUU2 404 aaPredicted RBP9.63□□□□□ -0.87
SNX13-201ENST00000409076 KIF28PB7ZC32 967 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 SLU7O95391 586 aaKnown RBP9.62□□□□□ -0.87
SNX13-201ENST00000409076 PFKFB1P16118 471 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 AKAP17AQ02040 695 aaKnown RBP9.62□□□□□ -0.87
SNX13-201ENST00000409076 WWC2Q6AWC2 1192 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 CWC25Q9NXE8 425 aaPredicted RBP9.62□□□□□ -0.87
SNX13-201ENST00000409076 MAST3O60307 1309 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 FGAP02671 866 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 CDC25AP30304 524 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 FANCCQ00597 558 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 AMOTQ4VCS5 1084 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 CPLX2Q6PUV4 134 aaKnown RBP9.62□□□□□ -0.87
SNX13-201ENST00000409076 SAMD1Q6SPF0 538 aaPredicted RBP9.62□□□□□ -0.87
SNX13-201ENST00000409076 ANKLE2Q86XL3 938 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 CERS3Q8IU89 383 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 KBTBD3Q8NAB2 608 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 DRC1Q96MC2 740 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 FANCLQ9NW38 375 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 CTDNEP1O95476 244 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 HSPA2P54652 639 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 XAGE2Q96GT9 111 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 KIF20BQ96Q89 1820 aa9.62□□□□□ -0.87
SNX13-201ENST00000409076 GPAA1O43292 621 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 RANBP6O60518 1105 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 LMAN1P49257 510 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 TMCO3Q6UWJ1 677 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 KRT222Q8N1A0 295 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 KCNH5Q8NCM2 988 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 NOL10Q9BSC4 688 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 ARMT1Q9H993 441 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 RNF113AO15541 343 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 CCDC102AQ96A19 550 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 ACSBG1Q96GR2 724 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 HMG20BQ9P0W2 317 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 TRMT112Q9UI30 125 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 ZNF609O15014 1411 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 IARSP41252 1262 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 IFIT5Q13325 482 aaKnown RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 IFNL2Q8IZJ0 200 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 ZSCAN16Q9H4T2 348 aaPredicted RBP9.61□□□□□ -0.87
SNX13-201ENST00000409076 KDRP35968 1356 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 SSH2Q76I76 1423 aa9.61□□□□□ -0.87
SNX13-201ENST00000409076 CLTCQ00610 1675 aaKnown RBP9.6□□□□□ -0.87
SNX13-201ENST00000409076 POLR2DO15514 142 aaKnown RBP9.6□□□□□ -0.87
SNX13-201ENST00000409076 PRKAB2O43741 272 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 MATR3P43243 847 aaKnown RBP eCLIP9.6□□□□□ -0.875e-6■■■■□ 24.5
SNX13-201ENST00000409076 SF3A3Q12874 501 aaKnown RBP eCLIP9.6□□□□□ -0.87
SNX13-201ENST00000409076 CAPZA3Q96KX2 299 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 TM6SF1Q9BZW5 370 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 NAPBQ9H115 298 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 BLZF1Q9H2G9 400 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 SLC52A2Q9HAB3 445 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 COL15A1P39059 1388 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 AOX1Q06278 1338 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 BTBD18B2RXH4 712 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 EVCP57679 992 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 NR5A1Q13285 461 aa9.6□□□□□ -0.87
SNX13-201ENST00000409076 TMEM87AQ8NBN3 555 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms