RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 SMC4Q9NTJ3 1288 aa7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 BSDC1Q9NW68 430 aaPredicted RBP7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 PODXL2Q9NZ53 605 aa7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 C9orf78Q9NZ63 289 aaPredicted RBP7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 GPRC5DQ9NZD1 345 aa7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 MINPP1Q9UNW1 487 aa7.31□□□□□ -1.24
HMGB1P20-201ENST00000402555 TK2O00142 265 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 SNAP23O00161 211 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 ALDH1L1O75891 902 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 ITGBL1O95965 494 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 NBPF7P0C2Y1 421 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 KLRK1P26718 216 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 IGHMBP2P38935 993 aaKnown RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 MFSD10Q14728 455 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 TNIP1Q15025 636 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 ADGRD1Q6QNK2 874 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 LMBR1LQ6UX01 489 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 PNMA8AQ86V59 439 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 CNTROBQ8N137 903 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 HELBQ8NG08 1087 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 TRPM4Q8TD43 1214 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 SUCLG2Q96I99 432 aa7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 ZNF594Q96JF6 807 aaPredicted RBP7.3□□□□□ -1.24
HMGB1P20-201ENST00000402555 PASKQ96RG2 1323 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 ANKRD18BA2A2Z9 1011 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 TRAF5O00463 557 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 ATP2B4P23634 1241 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 CCT4P50991 539 aaKnown RBP7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 HIRAP54198 1017 aaPredicted RBP7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 HNRNPUQ00839 825 aaKnown RBP eCLIP7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 CHRNDQ07001 517 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 TXNRD3Q86VQ6 643 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 KLRG1Q96E93 195 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 KAZALD1Q96I82 304 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 MPHOSPH8Q99549 860 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 ADARB2Q9NS39 739 aaKnown RBP7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 CNOT7Q9UIV1 285 aaKnown RBP7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 PCNTO95613 3336 aa7.29□□□□□ -1.24
HMGB1P20-201ENST00000402555 PTPRCP08575 1304 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 TAF5LO75529 589 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 EGFRP00533 1210 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 PSEN2P49810 448 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 IFIT5Q13325 482 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 ALDH1L2Q3SY69 923 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 TBC1D10BQ4KMP7 808 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 RBM26Q5T8P6 1007 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 DMRTA1Q5VZB9 504 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 DLK2Q6UY11 383 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 USP50Q70EL3 339 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 SAMD7Q7Z3H4 446 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 DDX27Q96GQ7 796 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 LARP6Q9BRS8 491 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 MXD3Q9BW11 206 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 GLIS2Q9BZE0 524 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 MKRN1Q9UHC7 482 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 NOB1Q9ULX3 412 aaKnown RBP7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 MED23Q9ULK4 1368 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 A0A1B0GUL6 1792 aa7.28□□□□□ -1.24
HMGB1P20-201ENST00000402555 ZNF804BA4D1E1 1349 aa7.27□□□□□ -1.24
HMGB1P20-201ENST00000402555 H7C1D1 291 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 HRO43593 1189 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 PLIN1O60240 522 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 VIL1P09327 827 aaKnown RBP7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 KCNJ4P48050 445 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 RARSP54136 660 aaKnown RBP7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 TAF7LQ5H9L4 462 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 ANKRD44Q8N8A2 993 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 DPF2Q92785 391 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 FBXW7Q969H0 707 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 PUS3Q9BZE2 481 aaKnown RBP7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 ANKRD2Q9GZV1 360 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 USP44Q9H0E7 712 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 BICC1Q9H694 974 aaKnown RBP7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 TNNQ9UQP3 1299 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 PSME4Q14997 1843 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 UTYO14607 1347 aa7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 ASTN2O75129 1339 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P20-201ENST00000402555 POLR2AP24928 1970 aaKnown RBP7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 USP17L3A6NCW0 530 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 USP17L4A6NCW7 530 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 TMEM88BA6NKF7 163 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 CT47B1P0C2W7 299 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 RPS12P25398 132 aaKnown RBP7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 FOSBP53539 338 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 CCDC57Q2TAC2 916 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 RSBN1LQ6PCB5 846 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 LDHAL6AQ6ZMR3 332 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 USP17L1Q7RTZ2 530 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 KLHDC4Q8TBB5 520 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 CNNM1Q9NRU3 951 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 LEMD3Q9Y2U8 911 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 ZNF646O15015 1829 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 IRS2Q9Y4H2 1338 aa7.26□□□□□ -1.25
HMGB1P20-201ENST00000402555 BCAR3O75815 825 aa7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 KIF4BQ2VIQ3 1234 aa7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 RABL6Q3YEC7 729 aaPredicted RBP7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 LRRC24Q50LG9 513 aa7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 PODNQ7Z5L7 613 aa7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 USP48Q86UV5 1035 aa7.25□□□□□ -1.25
HMGB1P20-201ENST00000402555 JMYQ8N9B5 988 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms