RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 INCENPQ9NQS7 918 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 CCDC66A2RUB6 948 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 STAMBPO95630 424 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 CCDC50Q8IVM0 306 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 GPHNQ9NQX3 736 aaPredicted RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 NUP153P49790 1475 aaKnown RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 A1BGP04217 495 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 ESYT1Q9BSJ8 1104 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 ZSCAN16Q9H4T2 348 aaPredicted RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 MAP3K19Q56UN5 1328 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 MYCLP12524 364 aaPredicted RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 USH1GQ495M9 461 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 GRIPAP1Q4V328 841 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 FCHSD1Q86WN1 690 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 ZSWIM4Q9H7M6 989 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 MAP9Q49MG5 647 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 IL27Q8NEV9 243 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 SH2D4AQ9H788 454 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 KIF18AQ8NI77 898 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 CCDC172P0C7W6 258 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 SMC1AQ14683 1233 aaKnown RBP12.9□□□□□ -0.34
TTC28-201ENST00000397906 RNF216Q9NWF9 866 aaPredicted RBP12.9□□□□□ -0.34
TTC28-201ENST00000397906 SERPINA10Q9UK55 444 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 TNNQ9UQP3 1299 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 BAG6P46379 1132 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 CCDC87Q9NVE4 849 aa12.9□□□□□ -0.34
TTC28-201ENST00000397906 ZNF165P49910 485 aa12.9□□□□□ -0.35
TTC28-201ENST00000397906 CCDC129Q6ZRS4 1044 aa12.9□□□□□ -0.35
TTC28-201ENST00000397906 IKBKGQ9Y6K9 419 aa12.9□□□□□ -0.35
TTC28-201ENST00000397906 KIAA0556O60303 1618 aa12.9□□□□□ -0.35
TTC28-201ENST00000397906 ADCY5O95622 1261 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 ZSCAN22P10073 491 aaPredicted RBP12.89□□□□□ -0.35
TTC28-201ENST00000397906 MAATS1Q7Z4T9 603 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 ZMYND15Q9H091 742 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 EIF2AK4Q9P2K8 1649 aaKnown RBP12.89□□□□□ -0.35
TTC28-201ENST00000397906 ABCC10Q5T3U5 1492 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 KRT79Q5XKE5 535 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 MAEAQ7L5Y9 396 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 NIM1KQ8IY84 436 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 AKR1B10O60218 316 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 ARHGEF10LQ9HCE6 1279 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 UGGT2Q9NYU1 1516 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 LETM2Q2VYF4 491 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 GSTA5Q7RTV2 222 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 KIAA0753Q2KHM9 967 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 GIGYF2Q6Y7W6 1299 aaKnown RBP12.89□□□□□ -0.35
TTC28-201ENST00000397906 ANKRD44Q8N8A2 993 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 TTC6Q86TZ1 520 aa12.89□□□□□ -0.35
TTC28-201ENST00000397906 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
TTC28-201ENST00000397906 UBASH3AP57075 661 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 UBE2HP62256 183 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 A0A1B0GUL7 405 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 CCNT1O60563 726 aaKnown RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 LGR6Q9HBX8 967 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 NOP56O00567 594 aaKnown RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 TRIM75PA6NK02 468 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 PPP1R14CQ8TAE6 165 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 SMCR8Q8TEV9 937 aaPredicted RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 KCNG4Q8TDN1 519 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 ARHGAP45Q92619 1136 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 TIMM10P62072 90 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 EP400NLQ6ZTU2 488 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 ZNF526Q8TF50 670 aaPredicted RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 TCIRG1Q13488 830 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 PUM3Q15397 648 aaKnown RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 DCAF17Q5H9S7 520 aaPredicted RBP12.88□□□□□ -0.35
TTC28-201ENST00000397906 GBP3Q9H0R5 595 aa12.88□□□□□ -0.35
TTC28-201ENST00000397906 PPIP5K2O43314 1243 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 PRAG1Q86YV5 1406 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 PRDM1O75626 825 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 ANO6Q4KMQ2 910 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 CCDC171Q6TFL3 1326 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 B4E1Z4 1266 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 PLBD2Q8NHP8 589 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 SORBS3O60504 671 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 CDCA7Q9BWT1 371 aaPredicted RBP12.87□□□□□ -0.35
TTC28-201ENST00000397906 GNA11P29992 359 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 STX17P56962 302 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 RTL1A6NKG5 1358 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 FSD2A1L4K1 749 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 ARHGAP27Q6ZUM4 889 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 KRT5P13647 590 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 NAA15Q9BXJ9 866 aaKnown RBP12.87□□□□□ -0.35
TTC28-201ENST00000397906 CCDC169A6NNP5 214 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 BMP15O95972 392 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 PCDHB15Q9Y5E8 787 aa12.87□□□□□ -0.35
TTC28-201ENST00000397906 NDUFB9Q9Y6M9 179 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 CALML3P27482 149 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 TRIM6Q9C030 488 aaPredicted RBP12.86□□□□□ -0.35
TTC28-201ENST00000397906 SH3TC1Q8TE82 1336 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 PARP10Q53GL7 1025 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 ZBTB9Q96C00 473 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 SHTN1A0MZ66 631 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 DNM1Q05193 864 aaKnown RBP12.86□□□□□ -0.35
TTC28-201ENST00000397906 SPOUT1Q5T280 376 aaKnown RBP12.86□□□□□ -0.35
TTC28-201ENST00000397906 LRRC45Q96CN5 670 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 SLC52A2Q9HAB3 445 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 VWA3AA6NCI4 1184 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms