RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TAF4BQ92750 862 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 FAM227BQ96M60 508 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 VAT1LQ9HCJ6 419 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 CALCOCO1Q9P1Z2 691 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 MYO6Q9UM54 1294 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 FER1L4A9Z1Z3 1794 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC194A0A1B0GVG4 234 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 PTPDC1A2A3K4 754 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 PRAMEF22A3QJZ6 481 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 NBPF7P0C2Y1 421 aaPredicted RBP12.37□□□□□ -0.43
CCDC40-204ENST00000397545 ZNF445P59923 1031 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 RUFY3Q7L099 469 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 WWC3Q9ULE0 1092 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC171Q6TFL3 1326 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 SPTLC2O15270 562 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 ZBTB43O43298 467 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 RBM5P52756 815 aaKnown RBP eCLIP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 STX17P56962 302 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 EIF4A1P60842 406 aaKnown RBP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 SYT10Q6XYQ8 523 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 NFATC2IPQ8NCF5 419 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC150Q8NCX0 1101 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 ZNF397Q8NF99 534 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 VIRMAQ69YN4 1812 aaKnown RBP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 ANKARQ7Z5J8 1434 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 ALDH1L1O75891 902 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 ERLIN2O94905 339 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 MTIF2P46199 727 aaKnown RBP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 TIMM10P62072 90 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 SNX14Q9Y5W7 946 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 SLU7O95391 586 aaKnown RBP12.36□□□□□ -0.43
CCDC40-204ENST00000397545 OTUD7BQ6GQQ9 843 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 MFSD6Q6ZSS7 791 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 KCNG4Q8TDN1 519 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 UBA5Q9GZZ9 404 aa12.36□□□□□ -0.43
CCDC40-204ENST00000397545 PRC1O43663 620 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 YEATS4O95619 227 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 CAVIN4Q5BKX8 364 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 SLC9C2Q5TAH2 1124 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 IQCEQ6IPM2 695 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 NCOA5Q9HCD5 579 aaKnown RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 UBA7P41226 1012 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 TFCP2Q12800 502 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 KARSQ15046 597 aaKnown RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 FKBP15Q5T1M5 1219 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 HELBQ8NG08 1087 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 SMARCC1Q92922 1105 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 PALD1Q9ULE6 856 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 SLC5A1P13866 664 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 AKAP4Q5JQC9 854 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 TRMT1LQ7Z2T5 733 aaKnown RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 CATIPQ7Z7H3 387 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 BICC1Q9H694 974 aaKnown RBP12.35□□□□□ -0.43
CCDC40-204ENST00000397545 AXIN2Q9Y2T1 843 aa12.35□□□□□ -0.43
CCDC40-204ENST00000397545 U2AF2P26368 475 aaKnown RBP eCLIP12.34□□□□□ -0.434e-6■■□□□ 13.2
CCDC40-204ENST00000397545 ACSBG1Q96GR2 724 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 RIOK3O14730 519 aaKnown RBP12.34□□□□□ -0.43
CCDC40-204ENST00000397545 DRC1Q96MC2 740 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 ARFGAP3Q9NP61 516 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 SGSM2O43147 1006 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 RNMTO43148 476 aaKnown RBP12.34□□□□□ -0.43
CCDC40-204ENST00000397545 PHACTR2O75167 634 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 ATP2B3Q16720 1220 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 PROSER3Q2NL68 480 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC94Q9BW85 323 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-204ENST00000397545 RNF41Q9H4P4 317 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-204ENST00000397545 JADE2Q9NQC1 790 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 PAG1Q9NWQ8 432 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 TTC41PQ6P2S7 1318 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 NRKQ7Z2Y5 1582 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 PAFAH1B1P43034 410 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC113Q9H0I3 377 aa12.34□□□□□ -0.43
CCDC40-204ENST00000397545 DHX32Q7L7V1 743 aaKnown RBP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 DZIP1Q86YF9 867 aaKnown RBP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 EDC3Q96F86 508 aaKnown RBP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 FAM107BQ9H098 131 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 BCCIPQ9P287 314 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 HLTFQ14527 1009 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 UNC5CLQ8IV45 518 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 LZTFL1Q9NQ48 299 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 MPHOSPH10O00566 681 aaKnown RBP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 MYO1BO43795 1136 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 ZNF76P36508 570 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 ARHGEF25Q86VW2 580 aa12.33□□□□□ -0.44
CCDC40-204ENST00000397545 ZNF444Q8N0Y2 327 aaPredicted RBP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC40-204ENST00000397545 TSPY2A6NKD2 308 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 WTAPQ15007 396 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 MAP9Q49MG5 647 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 GTF3C6Q969F1 213 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 DHX58Q96C10 678 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 PIK3C2AO00443 1686 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 RRAGBQ5VZM2 374 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 UTP14AQ9BVJ6 771 aaKnown RBP12.32□□□□□ -0.44
CCDC40-204ENST00000397545 STX8Q9UNK0 236 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 ZNF335Q9H4Z2 1342 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-204ENST00000397545 JAK2O60674 1132 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 SPTY2D1Q68D10 685 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-204ENST00000397545 DBNDD2Q9BQY9 259 aa12.32□□□□□ -0.44
CCDC40-204ENST00000397545 SEC63Q9UGP8 760 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms