RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZSCAN30Q86W11 494 aa8.12□□□□□ -1.11
UPF2-203ENST00000397053 KCNG4Q8TDN1 519 aa8.12□□□□□ -1.11
UPF2-203ENST00000397053 CCDC42Q96M95 316 aa8.12□□□□□ -1.11
UPF2-203ENST00000397053 SLC5A4Q9NY91 659 aa8.12□□□□□ -1.11
UPF2-203ENST00000397053 BRPF3Q9ULD4 1205 aa8.12□□□□□ -1.11
UPF2-203ENST00000397053 H7C1D1 291 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 ALDH3A1P30838 453 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 HSPA2P54652 639 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 UBASH3AP57075 661 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 DAAM2Q86T65 1068 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 CPXCR1Q8N123 301 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 LMTK3Q96Q04 1460 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 DNM2P50570 870 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 RARSP54136 660 aaKnown RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 TERF1P54274 439 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 CCDC110Q8TBZ0 833 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 STMN4Q9H169 189 aaPredicted RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 EPRSP07814 1512 aaKnown RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 GRM8O00222 908 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 KIF5AQ12840 1032 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 SNW1Q13573 536 aaKnown RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 PPP1R21Q6ZMI0 780 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 NEK11Q8NG66 645 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 DHX58Q96C10 678 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 TCEANC2Q96MN5 208 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 CHPF2Q9P2E5 772 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 CCDC160A6NGH7 325 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 NAP1L4Q99733 375 aaKnown RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 GTPBP4Q9BZE4 634 aaKnown RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 TRIM7Q9C029 511 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 FRMD4BQ9Y2L6 1034 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 MYCLP12524 364 aaPredicted RBP8.11□□□□□ -1.11
UPF2-203ENST00000397053 STRN3Q13033 797 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 CALCOCO2Q13137 446 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 MCMDC2Q4G0Z9 681 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 RNF169Q8NCN4 708 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 HAUS2Q9NVX0 235 aa8.11□□□□□ -1.11
UPF2-203ENST00000397053 RTL9Q8NET4 1388 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 PTPDC1A2A3K4 754 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 PARP1P09874 1014 aaKnown RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 KRT5P13647 590 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 JAKMIP2Q96AA8 810 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 NBPF3Q9H094 633 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 MTUS1Q9ULD2 1270 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 CSADQ9Y600 493 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 BICDL2A1A5D9 508 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 ALDH1L1O75891 902 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 MARCKSP29966 332 aaPredicted RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 CNGA1P29973 690 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 RAPGEF1Q13905 1077 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 PPP2R5DQ14738 602 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 DCAF17Q5H9S7 520 aaPredicted RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 TSHZ3Q63HK5 1081 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 DTHD1Q6ZMT9 781 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 USP48Q86UV5 1035 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 FMNL3Q8IVF7 1028 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 NIM1KQ8IY84 436 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 RPUSD2Q8IZ73 545 aaKnown RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 RIOK1Q9BRS2 568 aaKnown RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 AGTPBP1Q9UPW5 1226 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 BCS1LQ9Y276 419 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 TACC3Q9Y6A5 838 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 TLDC2A0PJX2 215 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 CHMP2AO43633 222 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 ZBED4O75132 1171 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 HSPA4P34932 840 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 DPP8Q6V1X1 898 aaPredicted RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 CCDC25Q86WR0 208 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 FNBP4Q8N3X1 1017 aaPredicted RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 ATRIPQ8WXE1 791 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 TROQ12816 1431 aaPredicted RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 MAST3O60307 1309 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 PPP1R7Q15435 360 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 CLUL1Q15846 466 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 CCDC65Q8IXS2 484 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 STIM2Q9P246 746 aa8.1□□□□□ -1.11
UPF2-203ENST00000397053 MTRF1LQ9UGC7 380 aaKnown RBP8.1□□□□□ -1.11
UPF2-203ENST00000397053 CTAGE15A4D2H0 777 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 NR1I2O75469 434 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CTAGE8P0CG41 777 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 KSR2Q6VAB6 950 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CTAGE6Q86UF2 777 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CTAGE4Q8IX94 777 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 MAGEB6Q8N7X4 407 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 SUPT20HQ8NEM7 779 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 FAM200AQ8TCP9 573 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CSRNP2Q9H175 543 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 C19orf44Q9H6X5 657 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 GPCPD1Q9NPB8 672 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.09□□□□□ -1.11
UPF2-203ENST00000397053 RUSC2Q8N2Y8 1516 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 FAM83GA6ND36 823 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 ERCC5P28715 1186 aaPredicted RBP8.09□□□□□ -1.11
UPF2-203ENST00000397053 KRT9P35527 623 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 NECAB1Q8N987 351 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 MRPS27Q92552 414 aaKnown RBP8.09□□□□□ -1.11
UPF2-203ENST00000397053 ANO3Q9BYT9 981 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CCDC87Q9NVE4 849 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 GGA1Q9UJY5 639 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CFTRP13569 1480 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms