RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OS9Q13438 667 aaPredicted RBP26.84■■□□□ 1.89
CLN3-207ENST00000395653 TBC1D10BQ4KMP7 808 aaPredicted RBP26.84■■□□□ 1.89
CLN3-207ENST00000395653 OGFOD1Q8N543 542 aa26.83■■□□□ 1.89
CLN3-207ENST00000395653 CERS5Q8N5B7 392 aa26.83■■□□□ 1.89
CLN3-207ENST00000395653 PGAP2Q9UHJ9 254 aa26.83■■□□□ 1.89
CLN3-207ENST00000395653 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.83■■□□□ 1.89
CLN3-207ENST00000395653 FRAT2O75474 233 aaPredicted RBP26.82■■□□□ 1.88
CLN3-207ENST00000395653 HSPA6P17066 643 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 KIF4BQ2VIQ3 1234 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 SIRT2Q8IXJ6 389 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 GPR108Q9NPR9 543 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 IQSEC3Q9UPP2 1182 aaPredicted RBP26.82■■□□□ 1.88
CLN3-207ENST00000395653 JAG2Q9Y219 1238 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 ZBTB22O15209 634 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 EGFRP00533 1210 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 TIMM10P62072 90 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 MAP1SQ66K74 1059 aaPredicted RBP26.82■■□□□ 1.88
CLN3-207ENST00000395653 KIAA0825Q8IV33 1275 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 MYOZ2Q9NPC6 264 aa26.82■■□□□ 1.88
CLN3-207ENST00000395653 GNL3LQ9NVN8 582 aaKnown RBP26.82■■□□□ 1.88
CLN3-207ENST00000395653 ADORA1P30542 326 aa26.81■■□□□ 1.88
CLN3-207ENST00000395653 RBM26Q5T8P6 1007 aaKnown RBP26.81■■□□□ 1.88
CLN3-207ENST00000395653 CNTROBQ8N137 903 aa26.81■■□□□ 1.88
CLN3-207ENST00000395653 HDAC9Q9UKV0 1011 aa26.81■■□□□ 1.88
CLN3-207ENST00000395653 ITGBL1O95965 494 aaPredicted RBP26.8■■□□□ 1.88
CLN3-207ENST00000395653 HSP90AB4PQ58FF6 505 aa26.8■■□□□ 1.88
CLN3-207ENST00000395653 MFSD14BQ5SR56 506 aa26.8■■□□□ 1.88
CLN3-207ENST00000395653 XAGE2Q96GT9 111 aa26.8■■□□□ 1.88
CLN3-207ENST00000395653 CCDC102BQ68D86 513 aa26.79■■□□□ 1.88
CLN3-207ENST00000395653 ERC1Q8IUD2 1116 aa26.79■■□□□ 1.88
CLN3-207ENST00000395653 TBC1D22AQ8WUA7 517 aa26.79■■□□□ 1.88
CLN3-207ENST00000395653 EXOC6BQ9Y2D4 811 aa26.79■■□□□ 1.88
CLN3-207ENST00000395653 PASKQ96RG2 1323 aa26.78■■□□□ 1.88
CLN3-207ENST00000395653 SEMA3EO15041 775 aa26.78■■□□□ 1.88
CLN3-207ENST00000395653 PHKA1P46020 1223 aa26.78■■□□□ 1.88
CLN3-207ENST00000395653 CHAF1AQ13111 956 aaPredicted RBP26.78■■□□□ 1.88
CLN3-207ENST00000395653 NEUROD6Q96NK8 337 aa26.78■■□□□ 1.88
CLN3-207ENST00000395653 TNNI3KQ59H18 835 aa26.77■■□□□ 1.88
CLN3-207ENST00000395653 FPGT-TNNI3KV9GXZ4 949 aa26.77■■□□□ 1.88
CLN3-207ENST00000395653 MYH13Q9UKX3 1938 aa26.76■■□□□ 1.87
CLN3-207ENST00000395653 CRBNQ96SW2 442 aa26.76■■□□□ 1.87
CLN3-207ENST00000395653 COL1A1P02452 1464 aaPredicted RBP26.76■■□□□ 1.87
CLN3-207ENST00000395653 APLP1P51693 650 aa26.75■■□□□ 1.87
CLN3-207ENST00000395653 WDR66Q8TBY9 1149 aa26.75■■□□□ 1.87
CLN3-207ENST00000395653 DENND2AQ9ULE3 1009 aa26.75■■□□□ 1.87
CLN3-207ENST00000395653 F8W031 263 aaPredicted RBP26.74■■□□□ 1.87
CLN3-207ENST00000395653 SCARF1Q14162 830 aa26.74■■□□□ 1.87
CLN3-207ENST00000395653 GORABQ5T7V8 394 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 ZBED3Q96IU2 234 aaPredicted RBP26.73■■□□□ 1.87
CLN3-207ENST00000395653 SUGT1Q9Y2Z0 365 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 PDS5AQ29RF7 1337 aaKnown RBP26.73■■□□□ 1.87
CLN3-207ENST00000395653 WNT10BO00744 389 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 CDC37L1Q7L3B6 337 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 MTMR14Q8NCE2 650 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 DCPSQ96C86 337 aaKnown RBP26.73■■□□□ 1.87
CLN3-207ENST00000395653 GGA3Q9NZ52 723 aa26.73■■□□□ 1.87
CLN3-207ENST00000395653 TTF2Q9UNY4 1162 aaKnown RBP26.73■■□□□ 1.87
CLN3-207ENST00000395653 SUPT16HQ9Y5B9 1047 aaKnown RBP26.73■■□□□ 1.87
CLN3-207ENST00000395653 RAB11FIP3O75154 756 aa26.72■■□□□ 1.87
CLN3-207ENST00000395653 NBPF9Q3BBW0 867 aa26.72■■□□□ 1.87
CLN3-207ENST00000395653 RHPN1Q8TCX5 695 aa26.72■■□□□ 1.87
CLN3-207ENST00000395653 KIF1BPQ96EK5 621 aa26.72■■□□□ 1.87
CLN3-207ENST00000395653 RASGRF1Q13972 1273 aa26.71■■□□□ 1.87
CLN3-207ENST00000395653 GLIS2Q9BZE0 524 aaPredicted RBP26.71■■□□□ 1.87
CLN3-207ENST00000395653 SERPINA10Q9UK55 444 aa26.71■■□□□ 1.87
CLN3-207ENST00000395653 ASTN2O75129 1339 aaPredicted RBP26.71■■□□□ 1.87
CLN3-207ENST00000395653 PITPNM2Q9BZ72 1349 aa26.71■■□□□ 1.87
CLN3-207ENST00000395653 SALL1Q9NSC2 1324 aa26.71■■□□□ 1.87
CLN3-207ENST00000395653 DLGAP5Q15398 846 aa26.7■■□□□ 1.86
CLN3-207ENST00000395653 GRIK5Q16478 980 aa26.7■■□□□ 1.86
CLN3-207ENST00000395653 ANGEL2Q5VTE6 544 aaKnown RBP26.7■■□□□ 1.86
CLN3-207ENST00000395653 EAF2Q96CJ1 260 aaPredicted RBP26.7■■□□□ 1.86
CLN3-207ENST00000395653 DBNDD2Q9BQY9 259 aa26.7■■□□□ 1.86
CLN3-207ENST00000395653 UQCRFS1P1P0C7P4 283 aa26.69■■□□□ 1.86
CLN3-207ENST00000395653 ARID4AP29374 1257 aaPredicted RBP26.69■■□□□ 1.86
CLN3-207ENST00000395653 AAMPQ13685 434 aa26.69■■□□□ 1.86
CLN3-207ENST00000395653 CFAP100Q494V2 611 aa26.69■■□□□ 1.86
CLN3-207ENST00000395653 KRT26Q7Z3Y9 468 aa26.69■■□□□ 1.86
CLN3-207ENST00000395653 PCDHB15Q9Y5E8 787 aa26.69■■□□□ 1.86
CLN3-207ENST00000395653 MAST3O60307 1309 aa26.68■■□□□ 1.86
CLN3-207ENST00000395653 HDLBPQ00341 1268 aaKnown RBP26.68■■□□□ 1.86
CLN3-207ENST00000395653 DBNLQ9UJU6 430 aaKnown RBP26.68■■□□□ 1.86
CLN3-207ENST00000395653 SPDYE2BA6NHP3 402 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 TRAF5O00463 557 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 SPDYE6P0CI01 402 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 CCDC158Q5M9N0 1113 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 USP48Q86UV5 1035 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 SULF1Q8IWU6 871 aa26.67■■□□□ 1.86
CLN3-207ENST00000395653 ZGPATQ8N5A5 531 aaKnown RBP26.67■■□□□ 1.86
CLN3-207ENST00000395653 CLASRPQ8N2M8 674 aaKnown RBP26.66■■□□□ 1.86
CLN3-207ENST00000395653 ZNF512BQ96KM6 892 aaPredicted RBP26.66■■□□□ 1.86
CLN3-207ENST00000395653 MRIQ9BWK5 157 aa26.66■■□□□ 1.86
CLN3-207ENST00000395653 CCDC8Q9H0W5 538 aaPredicted RBP26.66■■□□□ 1.86
CLN3-207ENST00000395653 IL1RAPL2Q9NP60 686 aa26.66■■□□□ 1.86
CLN3-207ENST00000395653 CREBZFQ9NS37 354 aa26.66■■□□□ 1.86
CLN3-207ENST00000395653 APBB1O00213 710 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 RBM5P52756 815 aaKnown RBP eCLIP26.65■■□□□ 1.86
CLN3-207ENST00000395653 TTC39AQ5SRH9 613 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 AACSQ86V21 672 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 TLR7Q9NYK1 1049 aaKnown RBP26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms