RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NOL10Q9BSC4 688 aaKnown RBP20.64■□□□□ 0.9
SQSTM1-202ENST00000389805 GPTP24298 496 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 NYAP1Q6ZVC0 841 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 ISCA1Q9BUE6 129 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 SLU7O95391 586 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 CCDC57Q2TAC2 916 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 CHST3Q7LGC8 479 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 ERCC4Q92889 916 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 SCAND2PQ9GZW5 306 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 BTG4Q9NY30 223 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 LAMB4A4D0S4 1761 aa20.64■□□□□ 0.89
SQSTM1-202ENST00000389805 CALCOCO1Q9P1Z2 691 aa20.63■□□□□ 0.89
SQSTM1-202ENST00000389805 ELP1O95163 1332 aa20.63■□□□□ 0.89
SQSTM1-202ENST00000389805 KRT32Q14532 448 aa20.63■□□□□ 0.89
SQSTM1-202ENST00000389805 CEP126Q9P2H0 1117 aa20.63■□□□□ 0.89
SQSTM1-202ENST00000389805 FOSBP53539 338 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 HLFQ16534 295 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 TTLL5Q6EMB2 1281 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 ALDH8A1Q9H2A2 487 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 HSP90AB3PQ58FF7 597 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 GORABQ5T7V8 394 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 IPO4Q8TEX9 1081 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 ATG3Q9NT62 314 aa20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 PARP4Q9UKK3 1724 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-202ENST00000389805 BECN2A8MW95 431 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 HNRNPH2P55795 449 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 PI16Q6UXB8 463 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 HSPD1P10809 573 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 SCARF1Q14162 830 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 CCAR2Q8N163 923 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 FAM53CQ9NYF3 392 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 CCZ1BP86790 482 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 CCZ1P86791 482 aaPredicted RBP20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 IQCB1Q15051 598 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 ZMYM1Q5SVZ6 1142 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 GPR108Q9NPR9 543 aa20.61■□□□□ 0.89
SQSTM1-202ENST00000389805 SH3TC1Q8TE82 1336 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 M0R2C6 588 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 POLR3GO15318 223 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 SCRN1Q12765 414 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 MAST3O60307 1309 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 APOBRQ0VD83 1088 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 RBM43Q6ZSC3 357 aaKnown RBP20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 KLHL34Q8N239 644 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 OSBP2Q969R2 916 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 TRIM34Q9BYJ4 488 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 TNS2Q63HR2 1409 aa20.6■□□□□ 0.89
SQSTM1-202ENST00000389805 TJP1Q07157 1748 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 PDCP20941 246 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 XAGE2Q96GT9 111 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 UBR2Q8IWV8 1755 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 CCT2P78371 535 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 SLC4A9Q96Q91 983 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 HELLSQ9NRZ9 838 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 NUP188Q5SRE5 1749 aa20.59■□□□□ 0.89
SQSTM1-202ENST00000389805 RNF113AO15541 343 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-202ENST00000389805 TAF7LQ5H9L4 462 aa20.58■□□□□ 0.89
SQSTM1-202ENST00000389805 SYT10Q6XYQ8 523 aa20.58■□□□□ 0.89
SQSTM1-202ENST00000389805 PALLDQ8WX93 1383 aa20.58■□□□□ 0.89
SQSTM1-202ENST00000389805 KIF6Q6ZMV9 814 aa20.58■□□□□ 0.89
SQSTM1-202ENST00000389805 CIAO1O76071 339 aa20.58■□□□□ 0.88
SQSTM1-202ENST00000389805 CLCN6P51797 869 aa20.58■□□□□ 0.88
SQSTM1-202ENST00000389805 BMS1Q14692 1282 aaKnown RBP20.58■□□□□ 0.88
SQSTM1-202ENST00000389805 FTOQ9C0B1 505 aaKnown RBP eCLIP20.58■□□□□ 0.888e-6■■■□□ 15.4
SQSTM1-202ENST00000389805 NCOA5Q9HCD5 579 aaKnown RBP20.58■□□□□ 0.88
SQSTM1-202ENST00000389805 RFX7Q2KHR2 1363 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 CDC25BP30305 580 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 HAND2P61296 217 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 NEK11Q8NG66 645 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 E7EWF7 191 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 TTC39AQ5SRH9 613 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 DHX32Q7L7V1 743 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 GPHNQ9NQX3 736 aaPredicted RBP20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 FHOD1Q9Y613 1164 aa20.57■□□□□ 0.88
SQSTM1-202ENST00000389805 CYP2C19P33261 490 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 SNW1Q13573 536 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 WASHC4Q2M389 1173 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 SHANK3Q9BYB0 1731 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 ZAP70P43403 619 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 IFIT5Q13325 482 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 MRFAP1L1Q96HT8 127 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 DSCC1Q9BVC3 393 aa20.56■□□□□ 0.88
SQSTM1-202ENST00000389805 STARD3NLO95772 234 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 ARHGAP29Q52LW3 1261 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 CCDC158Q5M9N0 1113 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 ZBTB38Q8NAP3 1195 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 GREM2Q9H772 168 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 PCCAP05165 728 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 NEMFO60524 1076 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 DNAJC5Q9H3Z4 198 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 TOGARAM1Q9Y4F4 1720 aa20.55■□□□□ 0.88
SQSTM1-202ENST00000389805 TULP2O00295 520 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 CTDNEP1O95476 244 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 AOPEPQ8N6M6 819 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 TBC1D2BQ9UPU7 963 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 KDM4FA0A1W2PPD8 638 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 H3BQV1 296 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 PNMA6AP0CW24 399 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 PLA2G4AP47712 749 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 EXOSC10Q01780 885 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms