RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 SPATA7Q9P0W8 599 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 ATF5Q9Y2D1 282 aaPredicted RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 AHDC1Q5TGY3 1603 aaPredicted RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 LRRC7Q96NW7 1537 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 BRD4O60885 1362 aaPredicted RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 NLRP13Q86W25 1043 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 NACC2Q96BF6 587 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 INCENPQ9NQS7 918 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 CLTCL1P53675 1640 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 H0Y3Z8 333 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 BBOX1O75936 387 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 GABPB1Q06547 395 aaPredicted RBP9.22□□□□□ -0.93
USP48-203ENST00000374732 NFE2L2Q16236 605 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 DCLK2Q8N568 766 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 TBC1D20Q96BZ9 403 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 MAP3K14Q99558 947 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 PANK2Q9BZ23 570 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 ZSWIM4Q9H7M6 989 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 RRP15Q9Y3B9 282 aaKnown RBP9.22□□□□□ -0.93
USP48-203ENST00000374732 INSRP06213 1382 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 FMNL1O95466 1100 aaPredicted RBP9.22□□□□□ -0.93
USP48-203ENST00000374732 MAN1A1P33908 653 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 ZNF449Q6P9G9 518 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 UNC5DQ6UXZ4 953 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 GIMAP1Q8WWP7 306 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 DCAF16Q9NXF7 216 aa9.22□□□□□ -0.93
USP48-203ENST00000374732 SCAF11Q99590 1463 aaKnown RBP9.22□□□□□ -0.93
USP48-203ENST00000374732 ERCC5P28715 1186 aaPredicted RBP9.21□□□□□ -0.93
USP48-203ENST00000374732 PLEKHG4BQ96PX9 1271 aa9.21□□□□□ -0.93
USP48-203ENST00000374732 CRACR2AQ9BSW2 395 aa9.21□□□□□ -0.93
USP48-203ENST00000374732 ASAP1Q9ULH1 1129 aa9.21□□□□□ -0.93
USP48-203ENST00000374732 TMEM98Q9Y2Y6 226 aa9.21□□□□□ -0.93
USP48-203ENST00000374732 DCCP43146 1447 aa9.21□□□□□ -0.93
USP48-203ENST00000374732 FRAT2O75474 233 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 B3GALNT1O75752 331 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 TPP2P29144 1249 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 TSPAN7P41732 249 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 RWDD2BP57060 319 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 ODR4Q5SWX8 454 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 CCBE1Q6UXH8 406 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 ARMC9Q7Z3E5 817 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 ANKRD20A12PQ8NF67 263 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 SYAP1Q96A49 352 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 TESK2Q96S53 571 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 IER2Q9BTL4 223 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 CLIC5Q9NZA1 410 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 C6orf203Q9P0P8 240 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 USTQ9Y2C2 406 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 STRCP1A6NGW2 1772 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 MYBBP1AQ9BQG0 1328 aaKnown RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 hCG_1984214I3L0E3 225 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 SLC26A4O43511 780 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 ATXN8OSP0DMR3 200 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 CYP11B2P19099 503 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 RAD51AP2Q09MP3 1159 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 PKN1Q16512 942 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 SPECC1Q5M775 1068 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 MEX3CQ5U5Q3 659 aaKnown RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 RASGRP2Q7LDG7 609 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 CHPFQ8IZ52 775 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 THEMISQ8N1K5 641 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 IPCEF1Q8WWN9 437 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 ZMAT5Q9UDW3 170 aaKnown RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 CFAP45Q9UL16 551 aa9.21□□□□□ -0.94
USP48-203ENST00000374732 ZNF330Q9Y3S2 320 aaPredicted RBP9.21□□□□□ -0.94
USP48-203ENST00000374732 LRPPRCP42704 1394 aaKnown RBP9.2□□□□□ -0.94
USP48-203ENST00000374732 NEK10Q6ZWH5 1172 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 RNF25Q96BH1 459 aaPredicted RBP9.2□□□□□ -0.94
USP48-203ENST00000374732 SLC39A13Q96H72 371 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 BAG1Q99933 345 aaPredicted RBP9.2□□□□□ -0.94
USP48-203ENST00000374732 ABCG4Q9H172 646 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 CASS4Q9NQ75 786 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 ACAD8Q9UKU7 415 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 PARD3Q8TEW0 1356 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 MYOM2P54296 1465 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 ATP2B1P20020 1258 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 HOXC13P31276 330 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 POU5F1BQ06416 359 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 BIRC3Q13489 604 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 E2F4Q16254 413 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 RABL6Q3YEC7 729 aaPredicted RBP9.2□□□□□ -0.94
USP48-203ENST00000374732 PACS1Q6VY07 963 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 CCDC65Q8IXS2 484 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 SH3KBP1Q96B97 665 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 RUNDC1Q96C34 613 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 CAPS2Q9BXY5 557 aa9.2□□□□□ -0.94
USP48-203ENST00000374732 SMG6Q86US8 1419 aaKnown RBP9.19□□□□□ -0.94
USP48-203ENST00000374732 TOM1O60784 492 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 SLC4A2P04920 1241 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 SRGNP10124 158 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 OAS2P29728 719 aaKnown RBP9.19□□□□□ -0.94
USP48-203ENST00000374732 RPS6KA3P51812 740 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 KIF11P52732 1056 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 NELL2Q99435 816 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 EXOC1Q9NV70 894 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 GRXCR2A6NFK2 248 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 PER1O15534 1290 aaPredicted RBP9.19□□□□□ -0.94
USP48-203ENST00000374732 MSL3P1P0C860 447 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 TAF11Q15544 211 aa9.19□□□□□ -0.94
USP48-203ENST00000374732 MTHFD1LQ6UB35 978 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms