RNA–Protein interactions for RNA: ENST00000369089.3

PRDM1-201, Transcript of PR/SET domain 1, humanhuman

TSL 1 (best) BASIC

Gene PRDM1, Length 4,675 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM1-201ENST00000369089 C6orf163Q5TEZ5 329 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 CCDC174Q6PII3 467 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 FSIP1Q8NA03 581 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 ZCRB1Q8TBF4 217 aaKnown RBP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 SRCIN1Q9C0H9 1055 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 SLC8A3P57103 927 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 PRPF4BQ13523 1007 aaKnown RBP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 WAPLQ7Z5K2 1190 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 B4GALNT2Q8NHY0 566 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 CDC25BP30305 580 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 VAV2P52735 878 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 CCDC96Q2M329 555 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 CCAR1Q8IX12 1150 aaKnown RBP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 TRIM7Q9C029 511 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 LZTFL1Q9NQ48 299 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 STIM2Q9P246 746 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 LARSQ9P2J5 1176 aaKnown RBP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 NRBP1Q9UHY1 535 aa11.78□□□□□ -0.52
PRDM1-201ENST00000369089 DENND4BO75064 1496 aaPredicted RBP11.78□□□□□ -0.52
PRDM1-201ENST00000369089 TRIM21P19474 475 aaKnown RBP11.77□□□□□ -0.52
PRDM1-201ENST00000369089 ESCO1Q5FWF5 840 aa11.77□□□□□ -0.52
PRDM1-201ENST00000369089 SULT6B1Q6IMI4 303 aa11.77□□□□□ -0.52
PRDM1-201ENST00000369089 TTC5Q8N0Z6 440 aa11.77□□□□□ -0.52
PRDM1-201ENST00000369089 ATG3Q9NT62 314 aa11.77□□□□□ -0.52
PRDM1-201ENST00000369089 C9orf78Q9NZ63 289 aaPredicted RBP11.77□□□□□ -0.52
PRDM1-201ENST00000369089 LCMT1Q9UIC8 334 aa11.77□□□□□ -0.52
PRDM1-201ENST00000369089 ARHGAP6O43182 974 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 PDE6BP35913 854 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 CCDC170Q8IYT3 715 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 RAPGEF4Q8WZA2 1011 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 TTC14Q96N46 770 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 JADE2Q9NQC1 790 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 RASSF10A6NK89 507 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 PARP9Q8IXQ6 854 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 CCDC63Q8NA47 563 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 CPLX3Q8WVH0 158 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 TAOK3Q9H2K8 898 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 TRIM42Q8IWZ5 723 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 PPP1R13BQ96KQ4 1090 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 USH1CQ9Y6N9 552 aa11.77□□□□□ -0.53
PRDM1-201ENST00000369089 TAF11Q15544 211 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 PUS7Q96PZ0 661 aaKnown RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 HOMER3Q9NSC5 361 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 PTPRCP08575 1304 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 NPC1L1Q9UHC9 1359 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 TTC22Q5TAA0 569 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 NUDT16Q96DE0 195 aaKnown RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 NAPGQ99747 312 aaPredicted RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 NLRP2Q9NX02 1062 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 GPRASP1Q5JY77 1395 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 MATR3P43243 847 aaKnown RBP eCLIP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 SF3B2Q13435 895 aaKnown RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 HDGFL1Q5TGJ6 251 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 DDX46Q7L014 1031 aaKnown RBP11.76□□□□□ -0.53
PRDM1-201ENST00000369089 TAF4BQ92750 862 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 CFAP43Q8NDM7 1665 aa11.76□□□□□ -0.53
PRDM1-201ENST00000369089 SMARCA5O60264 1052 aaPredicted RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 YEATS4O95619 227 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 PLA2G4AP47712 749 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 TRIM74Q86UV6 250 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 TRIM73Q86UV7 250 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 SPDYE1Q8NFV5 336 aaPredicted RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 USP6NLQ92738 828 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 DISP1Q96F81 1524 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 NUP160Q12769 1436 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 BIN1O00499 593 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 HNRNPCP07910 306 aaKnown RBP eCLIP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 PKP1Q13835 747 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 MUM1Q2TAK8 710 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 CCDC80Q76M96 950 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 C14orf93Q9H972 538 aaKnown RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 SCOCQ9UIL1 159 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 RBM6P78332 1123 aaKnown RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 MYO1EQ12965 1108 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 STK3Q13188 491 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 SPA17Q15506 151 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 MAGEC2Q9UBF1 373 aaPredicted RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 SATB2Q9UPW6 733 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 NOS1P29475 1434 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 ASXL2Q76L83 1435 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 TWISTNBQ3B726 338 aaPredicted RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 NAA16Q6N069 864 aaPredicted RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 HAUS1Q96CS2 278 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 UIMC1Q96RL1 719 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 USP26Q9BXU7 913 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 CLSTN2Q9H4D0 955 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 EIF4G3O43432 1585 aaKnown RBP11.75□□□□□ -0.53
PRDM1-201ENST00000369089 SYCP2Q9BX26 1530 aa11.75□□□□□ -0.53
PRDM1-201ENST00000369089 KLHL33A6NCF5 533 aa11.74□□□□□ -0.53
PRDM1-201ENST00000369089 USO1O60763 962 aaKnown RBP11.74□□□□□ -0.53
PRDM1-201ENST00000369089 HPDP32754 393 aaPredicted RBP11.74□□□□□ -0.53
PRDM1-201ENST00000369089 CASP8Q14790 479 aa11.74□□□□□ -0.53
PRDM1-201ENST00000369089 SCAF11Q99590 1463 aaKnown RBP11.74□□□□□ -0.53
PRDM1-201ENST00000369089 POGZQ7Z3K3 1410 aa11.74□□□□□ -0.53
PRDM1-201ENST00000369089 RRS1Q15050 365 aaKnown RBP11.74□□□□□ -0.53
PRDM1-201ENST00000369089 BLOC1S2Q6QNY1 142 aa11.74□□□□□ -0.53
PRDM1-201ENST00000369089 SRGAP1Q7Z6B7 1085 aa11.74□□□□□ -0.53
PRDM1-201ENST00000369089 ANKLE2Q86XL3 938 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms