RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 PREX2Q70Z35 1606 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CTAGE15A4D2H0 777 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 ERICH4A6NGS2 130 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 HLA-DOAP06340 250 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CTAGE8P0CG41 777 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 SLC9C2Q5TAH2 1124 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CTAGE6Q86UF2 777 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CTAGE4Q8IX94 777 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC82Q8N4S0 544 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 PLBD2Q8NHP8 589 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 TRIM47Q96LD4 638 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 METTL22Q9BUU2 404 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-205ENST00000367251 SAMD9LQ8IVG5 1584 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 PLEKHG3A1L390 1219 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 PSMA7O14818 248 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CYP7A1P22680 504 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 TFCP2Q12800 502 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 SNX14Q9Y5W7 946 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 BICDL2A1A5D9 508 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 STAT6P42226 847 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 TMEM87BQ96K49 555 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 CABP5Q9NP86 173 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 PA2G4Q9UQ80 394 aaKnown RBP10.25□□□□□ -0.77
SYNE1-205ENST00000367251 UTP14AQ9BVJ6 771 aaKnown RBP10.25□□□□□ -0.77
SYNE1-205ENST00000367251 BICC1Q9H694 974 aaKnown RBP10.25□□□□□ -0.77
SYNE1-205ENST00000367251 ARFGAP3Q9NP61 516 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 MAGI2Q86UL8 1455 aa10.25□□□□□ -0.77
SYNE1-205ENST00000367251 KRT2P35908 639 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CLSTN2Q9H4D0 955 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 ATP7BP35670 1465 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 SLC27A2O14975 620 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 ZBTB24O43167 697 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-205ENST00000367251 IL2RBP14784 551 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 HSPA4P34932 840 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CTR9Q6PD62 1173 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 NAP1L4Q99733 375 aaKnown RBP10.24□□□□□ -0.77
SYNE1-205ENST00000367251 NYXQ9GZU5 481 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC144CPQ8IYA2 1237 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC94Q9BW85 323 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-205ENST00000367251 ERVK-7P63135 1459 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 IVLP07476 585 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 ARL1P40616 181 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC91Q7Z6B0 441 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 GOLGA1Q92805 767 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 INCENPQ9NQS7 918 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 CTNNA2P26232 953 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 PPP2R5BQ15173 497 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 C19orf44Q9H6X5 657 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 IMPACTQ9P2X3 320 aa10.24□□□□□ -0.77
SYNE1-205ENST00000367251 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNE1-205ENST00000367251 MAGEB6P1A0A0J9YX57 407 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 GCP02774 474 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 IFFO1Q0D2I5 559 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 NAA16Q6N069 864 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-205ENST00000367251 PRPHP41219 470 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 TNNI3KQ59H18 835 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 HOOK3Q86VS8 718 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC117Q8IWD4 279 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-205ENST00000367251 FPGT-TNNI3KV9GXZ4 949 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 KDM6BO15054 1643 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 CTAGE9A4FU28 777 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 PLCG2P16885 1265 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 APOBRQ0VD83 1088 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 TRIM14Q14142 442 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 ZNF521Q96K83 1311 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 DHX37Q8IY37 1157 aaKnown RBP10.23□□□□□ -0.77
SYNE1-205ENST00000367251 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-205ENST00000367251 C6orf50Q9HD87 102 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 SAMM50Q9Y512 469 aa10.23□□□□□ -0.77
SYNE1-205ENST00000367251 TSPY3P0CV98 308 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 TSPY8P0CW00 308 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 CWF19L2Q2TBE0 894 aaKnown RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 FMNL3Q8IVF7 1028 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 ANKRD2Q9GZV1 360 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 DNAI1Q9UI46 699 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 EYA2O00167 538 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 SMC1AQ14683 1233 aaKnown RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 KRT24Q2M2I5 525 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 RILPL1Q5EBL4 403 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 G2E3Q7L622 706 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 DDX23Q9BUQ8 820 aaKnown RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 LRRC2Q9BYS8 371 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 RBSNQ9H1K0 784 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 HSF2BPO75031 334 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 TACC1O75410 805 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 MYL5Q02045 173 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 SLC39A6Q13433 755 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 LMOD1P29536 600 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 CNGA4Q8IV77 575 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 ZNF830Q96NB3 372 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 LMBRD1Q9NUN5 540 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 KRT86O43790 486 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 OPA1O60313 960 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 BRD1O95696 1058 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 ST5P78524 1137 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 MAP2K1Q02750 393 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 NFATC2IPQ8NCF5 419 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 LMBR1Q8WVP7 490 aa10.22□□□□□ -0.77
SYNE1-205ENST00000367251 CTNNBL1Q8WYA6 563 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-205ENST00000367251 NOD1Q9Y239 953 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms