RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 IFNL3Q8IZI9 196 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 SYCP3Q8IZU3 236 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 BICD2Q8TD16 824 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 GLG1Q92896 1179 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CLUAP1Q96AJ1 413 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 APOL6Q9BWW8 343 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 MKRN1Q9UHC7 482 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 GOLGA6L19H0YKK7 550 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 PPFIA3O75145 1194 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 CCDC172P0C7W6 258 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 RASGRF1Q13972 1273 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 KRT32Q14532 448 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 VEPH1Q14D04 833 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 SEPT7Q16181 437 aaKnown RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 RNF219Q5W0B1 726 aaPredicted RBP4.69□□□□□ -1.66
USH2A-202ENST00000366942 NOX5Q96PH1 765 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 GMEB2Q9UKD1 530 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 DDX19BQ9UMR2 479 aa4.69□□□□□ -1.66
USH2A-202ENST00000366942 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.69□□□□□ -1.66
USH2A-202ENST00000366942 EIF3CLB5ME19 914 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 RANBP6O60518 1105 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 OATP04181 439 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 SLC4A2P04920 1241 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 IL31Q6EBC2 164 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 IQCEQ6IPM2 695 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.68□□□□□ -1.66
USH2A-202ENST00000366942 TRIM17Q9Y577 477 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 RALGAPBQ86X10 1494 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PDCP20941 246 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 SDHBP21912 280 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 NEK4P51957 841 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 BFSP2Q13515 415 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 FAM160B1Q5W0V3 765 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 IFNL1Q8IU54 200 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 TMEM57Q8N5G2 664 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PYM1Q9BRP8 204 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 RTN4Q9NQC3 1192 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 EHD2Q9NZN4 543 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 NCDNQ9UBB6 729 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ZNF518AQ6AHZ1 1483 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 GOLGA8CPA6NN73 597 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PFDN6O15212 129 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 GCP02774 474 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 NBPF7P0C2Y1 421 aaPredicted RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 P4HA1P13674 534 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PAX3P23760 479 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 SSR1P43307 286 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 PSMC4P43686 418 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 TNFAIP2Q03169 654 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 IDI1Q13907 227 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 FBXO31Q5XUX0 539 aaPredicted RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 NSMFQ6X4W1 530 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 RUNDC1Q96C34 613 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 SYNDIG1Q9H7V2 258 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 USP19O94966 1318 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 MYBL2P10244 700 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ZC3H14Q6PJT7 736 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 RBM46Q8TBY0 533 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 PIK3R5Q8WYR1 880 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 DACH1Q9UI36 760 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 MAP3K5Q99683 1374 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ZNF608Q9ULD9 1512 aaPredicted RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 H0YCG3 227 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 NDC80O14777 642 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 HOXA2O43364 376 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 PTPREP23469 700 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 AMPD3Q01432 767 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 SNAPC2Q13487 334 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 BIRC3Q13489 604 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ANO6Q4KMQ2 910 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 NECAB2Q7Z6G3 386 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 TEX11Q8IYF3 940 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ACSF2Q96CM8 615 aaPredicted RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 CDHR1Q96JP9 859 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 ZNF341Q9BYN7 854 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 TSPYL1Q9H0U9 437 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 KLHL3Q9UH77 587 aa4.68□□□□□ -1.66
USH2A-202ENST00000366942 IPO11Q9UI26 975 aaKnown RBP4.68□□□□□ -1.66
USH2A-202ENST00000366942 PLCH2O75038 1416 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 PDIA4P13667 645 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 CCT6AP40227 531 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 ARMCX5Q6P1M9 558 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 ADAT2Q7Z6V5 191 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 STAMQ92783 540 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SRPK1Q96SB4 655 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 SDF4Q9BRK5 362 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 CCDC113Q9H0I3 377 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SLC28A3Q9HAS3 691 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 FAM13BQ9NYF5 915 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 FNDC3AQ9Y2H6 1198 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 POLA1P09884 1462 aaPredicted RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 RIMS2Q9UQ26 1411 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 DHX29Q7Z478 1369 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 ZNF335Q9H4Z2 1342 aaPredicted RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 FERP16591 822 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 BCAMP50895 628 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 AAMPQ13685 434 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 ANKRD1Q15327 319 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TXNRD1Q16881 649 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms