RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SUPT20HL1Q3ZLR7 823 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 OTUD7BQ6GQQ9 843 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 UBE3BQ7Z3V4 1068 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 MTMR14Q8NCE2 650 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 PLA2G12BQ9BX93 195 aa17.74■□□□□ 0.43
VPS29-201ENST00000360579 ZNF646O15015 1829 aaPredicted RBP17.73■□□□□ 0.43
VPS29-201ENST00000360579 OTOP1Q7RTM1 612 aa17.73■□□□□ 0.43
VPS29-201ENST00000360579 ERO1AQ96HE7 468 aa17.73■□□□□ 0.43
VPS29-201ENST00000360579 WNK4Q96J92 1243 aa17.73■□□□□ 0.43
VPS29-201ENST00000360579 CD209Q9NNX6 404 aa17.73■□□□□ 0.43
VPS29-201ENST00000360579 MKI67P46013 3256 aaKnown RBP17.73■□□□□ 0.43
VPS29-201ENST00000360579 KLRK1P26718 216 aa17.72■□□□□ 0.43
VPS29-201ENST00000360579 MYH3P11055 1940 aa17.72■□□□□ 0.43
VPS29-201ENST00000360579 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
VPS29-201ENST00000360579 CHRNDQ07001 517 aa17.71■□□□□ 0.43
VPS29-201ENST00000360579 TSPYL6Q8N831 410 aa17.71■□□□□ 0.43
VPS29-201ENST00000360579 MYH16Q9H6N6 1097 aa17.71■□□□□ 0.43
VPS29-201ENST00000360579 IGF2BP3O00425 579 aaKnown RBP eCLIP17.7■□□□□ 0.42
VPS29-201ENST00000360579 CSF1RP07333 972 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 GCKRQ14397 625 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 HABP4Q5JVS0 413 aaKnown RBP17.7■□□□□ 0.42
VPS29-201ENST00000360579 C15orf52Q6ZUT6 534 aaKnown RBP17.7■□□□□ 0.42
VPS29-201ENST00000360579 CLMNQ96JQ2 1002 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 FZD1Q9UP38 647 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 PTPN22Q9Y2R2 807 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 SPEF2Q9C093 1822 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 CENPFP49454 3210 aa17.7■□□□□ 0.42
VPS29-201ENST00000360579 ANKRD18BA2A2Z9 1011 aa17.69■□□□□ 0.42
VPS29-201ENST00000360579 FKBP1AP62942 108 aaKnown RBP17.69■□□□□ 0.42
VPS29-201ENST00000360579 ZNF804AQ7Z570 1209 aa17.69■□□□□ 0.42
VPS29-201ENST00000360579 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.69■□□□□ 0.42
VPS29-201ENST00000360579 SSC5DA1L4H1 1573 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 POTEFA5A3E0 1075 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 SPDYE2BA6NHP3 402 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 SPDYE6P0CI01 402 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 CRHR2Q13324 411 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 CFAP100Q494V2 611 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 ANKRD13AQ8IZ07 590 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 CERS5Q8N5B7 392 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 ARMC5Q96C12 935 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 EFCC1Q9HA90 598 aa17.68■□□□□ 0.42
VPS29-201ENST00000360579 IL1R1P14778 569 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 CASP7P55210 303 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 SP3Q02447 781 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 POLA2Q14181 598 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 ARHGEF6Q15052 776 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 TWISTNBQ3B726 338 aaPredicted RBP17.67■□□□□ 0.42
VPS29-201ENST00000360579 CD99L2Q8TCZ2 262 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 PRKRIP1Q9H875 184 aaPredicted RBP17.67■□□□□ 0.42
VPS29-201ENST00000360579 VEZTQ9HBM0 779 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 BRCA2P51587 3418 aa17.67■□□□□ 0.42
VPS29-201ENST00000360579 CLRN2A0PK11 232 aa17.66■□□□□ 0.42
VPS29-201ENST00000360579 TESPA1A2RU30 521 aaPredicted RBP17.66■□□□□ 0.42
VPS29-201ENST00000360579 F8W031 263 aaPredicted RBP17.66■□□□□ 0.42
VPS29-201ENST00000360579 TNFAIP1Q13829 316 aa17.66■□□□□ 0.42
VPS29-201ENST00000360579 NBPF12Q5TAG4 269 aaPredicted RBP17.66■□□□□ 0.42
VPS29-201ENST00000360579 LINS1Q8NG48 757 aa17.66■□□□□ 0.42
VPS29-201ENST00000360579 IRS2Q9Y4H2 1338 aa17.66■□□□□ 0.42
VPS29-201ENST00000360579 RBM5P52756 815 aaKnown RBP eCLIP17.65■□□□□ 0.42
VPS29-201ENST00000360579 FLIIQ13045 1269 aa17.65■□□□□ 0.42
VPS29-201ENST00000360579 IFIT5Q13325 482 aaKnown RBP17.65■□□□□ 0.42
VPS29-201ENST00000360579 RASA3Q14644 834 aa17.65■□□□□ 0.42
VPS29-201ENST00000360579 G2E3Q7L622 706 aa17.65■□□□□ 0.42
VPS29-201ENST00000360579 DNAAF4Q8WXU2 420 aa17.65■□□□□ 0.42
VPS29-201ENST00000360579 TSR2Q969E8 191 aaKnown RBP17.65■□□□□ 0.42
VPS29-201ENST00000360579 PRMT6Q96LA8 375 aaPredicted RBP17.65■□□□□ 0.42
VPS29-201ENST00000360579 TMEM106CQ9BVX2 250 aa17.65■□□□□ 0.42
VPS29-201ENST00000360579 LAMB1P07942 1786 aa17.64■□□□□ 0.41
VPS29-201ENST00000360579 TAF5LO75529 589 aa17.64■□□□□ 0.41
VPS29-201ENST00000360579 USP2O75604 605 aaPredicted RBP17.64■□□□□ 0.41
VPS29-201ENST00000360579 FKBP5Q13451 457 aaPredicted RBP17.64■□□□□ 0.41
VPS29-201ENST00000360579 PCDHAC2Q9Y5I4 1007 aa17.64■□□□□ 0.41
VPS29-201ENST00000360579 GJA5P36382 358 aa17.63■□□□□ 0.41
VPS29-201ENST00000360579 CCDC27Q2M243 656 aa17.63■□□□□ 0.41
VPS29-201ENST00000360579 NBPF11Q86T75 865 aa17.63■□□□□ 0.41
VPS29-201ENST00000360579 PTPN18Q99952 460 aa17.63■□□□□ 0.41
VPS29-201ENST00000360579 RBBP6Q7Z6E9 1792 aaKnown RBP17.63■□□□□ 0.41
VPS29-201ENST00000360579 SNAP23O00161 211 aa17.62■□□□□ 0.41
VPS29-201ENST00000360579 EN2P19622 333 aaPredicted RBP17.62■□□□□ 0.41
VPS29-201ENST00000360579 HELBQ8NG08 1087 aaPredicted RBP17.62■□□□□ 0.41
VPS29-201ENST00000360579 OPTNQ96CV9 577 aa17.62■□□□□ 0.41
VPS29-201ENST00000360579 CHMP3Q9Y3E7 222 aa17.62■□□□□ 0.41
VPS29-201ENST00000360579 ECM29Q5VYK3 1845 aa17.62■□□□□ 0.41
VPS29-201ENST00000360579 WDHD1O75717 1129 aaPredicted RBP17.61■□□□□ 0.41
VPS29-201ENST00000360579 SPDYE2Q495Y8 402 aa17.61■□□□□ 0.41
VPS29-201ENST00000360579 ZNF333Q96JL9 665 aa17.61■□□□□ 0.41
VPS29-201ENST00000360579 ELP3Q9H9T3 547 aa17.61■□□□□ 0.41
VPS29-201ENST00000360579 ZFYVE28Q9HCC9 887 aa17.61■□□□□ 0.41
VPS29-201ENST00000360579 SERPINA10Q9UK55 444 aa17.61■□□□□ 0.41
VPS29-201ENST00000360579 KIAA0100Q14667 2235 aaKnown RBP17.61■□□□□ 0.41
VPS29-201ENST00000360579 ATXN8OSP0DMR3 200 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 GTF2A2P52657 109 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 CCDC57Q2TAC2 916 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 SLC9C1Q4G0N8 1177 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 IL16Q14005 1332 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 FAM205AQ6ZU69 1335 aa17.6■□□□□ 0.41
VPS29-201ENST00000360579 TNNI2P48788 182 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 FOXO4P98177 505 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 TAF1CQ15572 869 aaPredicted RBP17.59■□□□□ 0.41
VPS29-201ENST00000360579 TAF7LQ5H9L4 462 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms