RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DENND2CQ68D51 928 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 N4BP2L2Q92802 583 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-203ENST00000353578 MPHOSPH6Q99547 160 aaKnown RBP14.15□□□□□ -0.14
COL6A3-203ENST00000353578 ZSWIM4Q9H7M6 989 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 PHACTR2O75167 634 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 RARSP54136 660 aaKnown RBP14.15□□□□□ -0.14
COL6A3-203ENST00000353578 CUL7Q14999 1698 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 OLFM3Q96PB7 478 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 TPX2Q9ULW0 747 aaKnown RBP14.15□□□□□ -0.14
COL6A3-203ENST00000353578 FAM160A1Q05DH4 1040 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 MSANTD4Q8NCY6 345 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 CDC25BP30305 580 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 LGSNQ5TDP6 509 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 SYT10Q6XYQ8 523 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 KIF21AQ7Z4S6 1674 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 MYL5Q02045 173 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 DRP2Q13474 957 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 NOX5Q96PH1 765 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 ERMNQ8TAM6 284 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 UBLCP1Q8WVY7 318 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-203ENST00000353578 SSX2IPQ9Y2D8 614 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 CCDC151A5D8V7 595 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 PSMC4P43686 418 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 SEL1L2Q5TEA6 688 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 ERCC6Q03468 1493 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 MTHFSP49914 203 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 GIMAP6Q6P9H5 292 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 SDCCAG8Q86SQ7 713 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-203ENST00000353578 TMTC2Q8N394 836 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 TMEM232C9JQI7 657 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 GFAPP14136 432 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 IDEP14735 1019 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 SPDL1Q96EA4 605 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 RUNDC3BQ96NL0 473 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 BAIAP2L1Q9UHR4 511 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 SLC12A7Q9Y666 1083 aa14.14□□□□□ -0.15
COL6A3-203ENST00000353578 CCDC170Q8IYT3 715 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 CCDC194A0A1B0GVG4 234 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 ZNF75DP51815 510 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 CCDC122Q5T0U0 273 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 POTEB3A0JP26 581 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 GOLGA8BA8MQT2 603 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 ZNF569Q5MCW4 686 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 POTEBQ6S5H4 581 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 RHOXF2BP0C7M4 288 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 RILPL1Q5EBL4 403 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 TMX3Q96JJ7 454 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 RHOXF2Q9BQY4 288 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 E7EVH7 732 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 PEX19P40855 299 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 AOPEPQ8N6M6 819 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 ATP5HO75947 161 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 FAM210AQ96ND0 272 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 PHLPP2Q6ZVD8 1323 aa14.13□□□□□ -0.15
COL6A3-203ENST00000353578 TROVE2P10155 538 aaKnown RBP eCLIP14.13□□□□□ -0.15
COL6A3-203ENST00000353578 FERMT3Q86UX7 667 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 TXNDC16Q9P2K2 825 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 SUN1O94901 812 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 TMEM57Q8N5G2 664 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 KRT13P13646 458 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 MRFAP1L1Q96HT8 127 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 MYH10P35580 1976 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 HPDP32754 393 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-203ENST00000353578 KIF6Q6ZMV9 814 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 PDE1CQ14123 709 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-203ENST00000353578 ZHX3Q9H4I2 956 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 SRGAP1Q7Z6B7 1085 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 ZBTB12Q9Y330 459 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-203ENST00000353578 SSBP05455 408 aaKnown RBP eCLIP14.12□□□□□ -0.15
COL6A3-203ENST00000353578 ANKRD20A3Q5VUR7 823 aa14.12□□□□□ -0.15
COL6A3-203ENST00000353578 ASXL1Q8IXJ9 1541 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 SPECC1L-ADORA2AF8WAN1 911 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 OPHN1O60890 802 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 RUBCNQ92622 972 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 HAUS1Q96CS2 278 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 THOC2Q8NI27 1593 aaKnown RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 UBA7P41226 1012 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 SATB1Q01826 763 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 PRPF40BQ6NWY9 871 aaKnown RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 TADA2BQ86TJ2 420 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 ATP2A3Q93084 1043 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 ST13P4Q8IZP2 240 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 NOP14P78316 857 aaKnown RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 SLC4A2P04920 1241 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 TTF1Q15361 905 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 GSDMBQ8TAX9 411 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 EPS15L1Q9UBC2 864 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 PSDA5PKW4 1024 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 EPSTI1Q96J88 318 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 C8orf34Q49A92 452 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 NEK11Q8NG66 645 aa14.11□□□□□ -0.15
COL6A3-203ENST00000353578 NOP53Q9NZM5 478 aaKnown RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 TFIP11Q9UBB9 837 aaKnown RBP14.11□□□□□ -0.15
COL6A3-203ENST00000353578 TRIM37O94972 964 aa14.1□□□□□ -0.15
COL6A3-203ENST00000353578 GUCA1BQ9UMX6 200 aa14.1□□□□□ -0.15
COL6A3-203ENST00000353578 TRAK1Q9UPV9 953 aa14.1□□□□□ -0.15
COL6A3-203ENST00000353578 ZMYM4Q5VZL5 1548 aa14.1□□□□□ -0.15
COL6A3-203ENST00000353578 AQRO60306 1485 aaKnown RBP eCLIP14.1□□□□□ -0.15
COL6A3-203ENST00000353578 PPP1R7Q15435 360 aa14.1□□□□□ -0.15
COL6A3-203ENST00000353578 CATIPQ7Z7H3 387 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms