RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RGPD3A6NKT7 1758 aaPredicted RBP11.15□□□□□ -0.62
USP4-202ENST00000351842 RGPD4Q7Z3J3 1758 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 JDP2Q8WYK2 163 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 ECE2O60344 883 aa11.14□□□□□ -0.63
USP4-202ENST00000351842 DZIP1Q86YF9 867 aaKnown RBP11.14□□□□□ -0.63
USP4-202ENST00000351842 IL25Q9H293 177 aa11.14□□□□□ -0.63
USP4-202ENST00000351842 LEMD3Q9Y2U8 911 aa11.14□□□□□ -0.63
USP4-202ENST00000351842 LAMB2P55268 1798 aa11.14□□□□□ -0.63
USP4-202ENST00000351842 CHMP4CQ96CF2 233 aa11.14□□□□□ -0.63
USP4-202ENST00000351842 COL11A2P13942 1736 aaPredicted RBP11.14□□□□□ -0.63
USP4-202ENST00000351842 RTL9Q8NET4 1388 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 COL24A1Q17RW2 1714 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 NFKBIEO00221 500 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 ATP5JP18859 108 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 RNF181Q9P0P0 153 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 TAOK2Q9UL54 1235 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 PCDHAC2Q9Y5I4 1007 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 NMIQ13287 307 aaPredicted RBP11.13□□□□□ -0.63
USP4-202ENST00000351842 EYA3Q99504 573 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 FBXO3Q9UK99 471 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 A0A0D9SFI3 127 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 CACNB3P54284 484 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 BMP2KLQ5H9B9 411 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 NIM1KQ8IY84 436 aa11.13□□□□□ -0.63
USP4-202ENST00000351842 TTC41PQ6P2S7 1318 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 SHTN1A0MZ66 631 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 CDC45O75419 566 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 CYP7A1P22680 504 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 CASC1Q6TDU7 716 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 NOL8Q76FK4 1167 aaKnown RBP11.12□□□□□ -0.63
USP4-202ENST00000351842 C7orf43Q8WVR3 580 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 AATFQ9NY61 560 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP4-202ENST00000351842 CEP350Q5VT06 3117 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 UQCRFS1P1P0C7P4 283 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 UBE2Q2Q8WVN8 375 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 HAUS7Q99871 368 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 SALL3Q9BXA9 1300 aa11.12□□□□□ -0.63
USP4-202ENST00000351842 RTKN2Q8IZC4 609 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 EVI5LQ96CN4 794 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 TTF2Q9UNY4 1162 aaKnown RBP11.11□□□□□ -0.63
USP4-202ENST00000351842 HAND2P61296 217 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 C8orf34Q49A92 452 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 GPR108Q9NPR9 543 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 STAP2Q9UGK3 403 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 ZNF532Q9HCE3 1301 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 LDHBP07195 334 aaKnown RBP11.11□□□□□ -0.63
USP4-202ENST00000351842 IARSP41252 1262 aaKnown RBP11.11□□□□□ -0.63
USP4-202ENST00000351842 DYNLL1P63167 89 aaKnown RBP11.11□□□□□ -0.63
USP4-202ENST00000351842 MAP3K12Q12852 859 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 PICALMQ13492 652 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 FBXO33Q7Z6M2 555 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 ZNF589Q86UQ0 364 aaPredicted RBP11.11□□□□□ -0.63
USP4-202ENST00000351842 ARMT1Q9H993 441 aa11.11□□□□□ -0.63
USP4-202ENST00000351842 YDJCA8MPS7 323 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 VPS53Q5VIR6 699 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 NAA16Q6N069 864 aaPredicted RBP11.1□□□□□ -0.63
USP4-202ENST00000351842 KIAA1211Q6ZU35 1233 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 PUS7LQ9H0K6 701 aaKnown RBP11.1□□□□□ -0.63
USP4-202ENST00000351842 DENND2AQ9ULE3 1009 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 CHMLP26374 656 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 PRELPP51888 382 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 KBTBD3Q8NAB2 608 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 SDR42E1Q8WUS8 393 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 TOMM22Q9NS69 142 aa11.1□□□□□ -0.63
USP4-202ENST00000351842 PSMD14O00487 310 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 PDE6AP16499 860 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 MECOMQ03112 1051 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 ADGRA1Q86SQ6 560 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 AIDAQ96BJ3 306 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 PRKAB2O43741 272 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 TCP10Q12799 353 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 TMC4Q7Z404 712 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 CERS5Q8N5B7 392 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 OSBP2Q969R2 916 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 CLRN2A0PK11 232 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 DTNBO60941 627 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 MBD4O95243 580 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 KIAA2012Q0VF49 1180 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 C9orf131Q5VYM1 1079 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.09□□□□□ -0.636e-7■■■■□ 23.1
USP4-202ENST00000351842 PODXL2Q9NZ53 605 aa11.09□□□□□ -0.63
USP4-202ENST00000351842 CASZ1Q86V15 1759 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 M0R2C6 588 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 UPF2Q9HAU5 1272 aaKnown RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 COL1A1P02452 1464 aaPredicted RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 DDNO94850 711 aaPredicted RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 ARID4AP29374 1257 aaPredicted RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 CXCL9Q07325 125 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 LARP6Q9BRS8 491 aaKnown RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 COA1Q9GZY4 146 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 OSBPL3Q9H4L5 887 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 VEZTQ9HBM0 779 aa11.08□□□□□ -0.64
USP4-202ENST00000351842 SAP30BPQ9UHR5 308 aaKnown RBP11.08□□□□□ -0.64
USP4-202ENST00000351842 SLURP2P0DP57 97 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 TBC1D10BQ4KMP7 808 aaPredicted RBP11.07□□□□□ -0.64
USP4-202ENST00000351842 TDRD7Q8NHU6 1098 aaKnown RBP11.07□□□□□ -0.64
USP4-202ENST00000351842 USP17L3A6NCW0 530 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 USP17L4A6NCW7 530 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 MINDY4BA8MYZ0 360 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 RNF113AO15541 343 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms