RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 PAG1Q9NWQ8 432 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 SERPINC1P01008 464 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ATP1A3P13637 1013 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 LINC00301Q8NCQ3 95 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ZNF202O95125 648 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 MARCKSP29966 332 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 TIGD1Q96MW7 591 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 RTEL1Q9NZ71 1219 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 CPLX1O14810 134 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 HSPD1P10809 573 aaKnown RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 FANCCQ00597 558 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 EXOSC10Q01780 885 aaKnown RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 KCNH5Q8NCM2 988 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 PHRF1Q9P1Y6 1649 aaKnown RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 FDPSP14324 419 aaKnown RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 CFAP100Q494V2 611 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 ZNF790Q6PG37 636 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 TMCO3Q6UWJ1 677 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 LMBR1LQ6UX01 489 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 L2HGDHQ9H9P8 463 aa12.85□□□□□ -0.35
SYNE1-202ENST00000347037 ARGLU1Q9NWB6 273 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-202ENST00000347037 PSDA5PKW4 1024 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 H2AFXP16104 143 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 RFX5P48382 616 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 HSP90AA4PQ58FG1 418 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 KCNG4Q8TDN1 519 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 UTP14AQ9BVJ6 771 aaKnown RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 LTN1O94822 1766 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 NLRP12P59046 1061 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 GNL2Q13823 731 aaKnown RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 NFATC2IPQ8NCF5 419 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 ORC3Q9UBD5 711 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 GOLGA8BA8MQT2 603 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 PNMA6AP0CW24 399 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 MAPK8IP2Q13387 824 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-202ENST00000347037 FHOD1Q9Y613 1164 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 SH3TC1Q8TE82 1336 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 LMTK3Q96Q04 1460 aa12.84□□□□□ -0.35
SYNE1-202ENST00000347037 A0A1W2PQ27 194 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 A0A1W2PQ64 194 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 A0A1W2PQD8 194 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 SEC31AO94979 1220 aaKnown RBP12.83□□□□□ -0.35
SYNE1-202ENST00000347037 UBASH3AP57075 661 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 ETF1P62495 437 aaKnown RBP12.83□□□□□ -0.35
SYNE1-202ENST00000347037 DSCC1Q9BVC3 393 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 CARD6Q9BX69 1037 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 EPC1Q9H2F5 836 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 FAM53CQ9NYF3 392 aa12.83□□□□□ -0.35
SYNE1-202ENST00000347037 NCAPD2Q15021 1401 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 SALL1Q9NSC2 1324 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 KLF18A0A0U1RQI7 1052 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 PFKFB1P16118 471 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 FKBP4Q02790 459 aaKnown RBP eCLIP12.83□□□□□ -0.36
SYNE1-202ENST00000347037 WASHC4Q2M389 1173 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 HSP90AB3PQ58FF7 597 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 ZNF274Q96GC6 653 aaPredicted RBP12.83□□□□□ -0.36
SYNE1-202ENST00000347037 HELLSQ9NRZ9 838 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 KCND1Q9NSA2 647 aa12.83□□□□□ -0.36
SYNE1-202ENST00000347037 IFIT1P09914 478 aaKnown RBP12.82□□□□□ -0.36
SYNE1-202ENST00000347037 MYSM1Q5VVJ2 828 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 PDILTQ8N807 584 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 CALCOCO1Q9P1Z2 691 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 RGPD2P0DJD1 1756 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 MAST3O60307 1309 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 GCP02774 474 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 CCDC93Q567U6 631 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 DPF2Q92785 391 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 ZNF496Q96IT1 587 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-202ENST00000347037 HEG1Q9ULI3 1381 aa12.82□□□□□ -0.36
SYNE1-202ENST00000347037 M0R2C6 588 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 CCP110O43303 1012 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 NCAPHQ15003 741 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 ZMYM1Q5SVZ6 1142 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 BPIFA3Q9BQP9 254 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 VGLL3A8MV65 326 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 KIF28PB7ZC32 967 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 SYKP43405 635 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 PLA2G4AP47712 749 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 ANO1Q5XXA6 986 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 PRC1O43663 620 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 YEATS4O95619 227 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 TOP1P11387 765 aaKnown RBP12.81□□□□□ -0.36
SYNE1-202ENST00000347037 IRX5P78411 483 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-202ENST00000347037 TEX35Q5T0J7 233 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 ZNF594Q96JF6 807 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-202ENST00000347037 POLR3EQ9NVU0 708 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 TMEM51Q9NW97 253 aa12.81□□□□□ -0.36
SYNE1-202ENST00000347037 RNF113AO15541 343 aaKnown RBP12.8□□□□□ -0.36
SYNE1-202ENST00000347037 PNOCQ13519 176 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 FBXO18Q8NFZ0 1043 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 ZBTB9Q96C00 473 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 CHMP4CQ96CF2 233 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 CCDC34Q96HJ3 373 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 AGXT2Q9BYV1 514 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 ALS2Q96Q42 1657 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 RFX7Q2KHR2 1363 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 TMEM232C9JQI7 657 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 DHX16O60231 1041 aaKnown RBP12.8□□□□□ -0.36
SYNE1-202ENST00000347037 EVCP57679 992 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms