RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RNF41Q9H4P4 317 aaPredicted RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 FAM13AO94988 1023 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 PHEXP78562 749 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 RASIP1Q5U651 963 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 SETD1BQ9UPS6 1966 aaKnown RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 DBN1Q16643 649 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 CABS1Q96KC9 395 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 NUCKS1Q9H1E3 243 aaKnown RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 DHX57Q6P158 1386 aaKnown RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 RASSF2P50749 326 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 SCAPERQ9BY12 1400 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 MAP3K7CLP57077 242 aa14.42□□□□□ -0.1
USP47-202ENST00000339865 MYCBPQ99417 103 aaPredicted RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 DNAJC8O75937 253 aaPredicted RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 ZSCAN16Q9H4T2 348 aaPredicted RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 ORC3Q9UBD5 711 aaPredicted RBP14.42□□□□□ -0.1
USP47-202ENST00000339865 GIGYF1O75420 1035 aaPredicted RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 ABTB1Q969K4 478 aaPredicted RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 DNAJC25Q9H1X3 360 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 NOC2LQ9Y3T9 749 aaKnown RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 SEL1L2Q5TEA6 688 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 I3L4J1 428 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 MGARPQ8TDB4 240 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 POLD1P28340 1107 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 LEO1Q8WVC0 666 aaPredicted RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 ZKSCAN5Q9Y2L8 839 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 SPDL1Q96EA4 605 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 TSPY2A6NKD2 308 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 HMGB1P1B2RPK0 211 aaPredicted RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 LPXNO60711 386 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 GABPAQ06546 454 aa14.41□□□□□ -0.1
USP47-202ENST00000339865 PDCD2Q16342 344 aaPredicted RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 UTP14CQ5TAP6 766 aaKnown RBP14.41□□□□□ -0.1
USP47-202ENST00000339865 MARCKSP29966 332 aaPredicted RBP14.4□□□□□ -0.1
USP47-202ENST00000339865 RPS6KA2Q15349 733 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 CNPY2Q9Y2B0 182 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 HAND2P61296 217 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 IRX4P78413 519 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 KLHL40Q2TBA0 621 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 TRIM6Q9C030 488 aaPredicted RBP14.4□□□□□ -0.1
USP47-202ENST00000339865 KAT14Q9H8E8 782 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 ABCC8Q09428 1581 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 ACRBPQ8NEB7 543 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 PSPC1Q8WXF1 523 aaKnown RBP14.4□□□□□ -0.1
USP47-202ENST00000339865 STK24Q9Y6E0 443 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 RLBP1P12271 317 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 TUBBP07437 444 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 TMED1Q13445 227 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 MRFAP1L1Q96HT8 127 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 CCDC8Q9H0W5 538 aaPredicted RBP14.4□□□□□ -0.1
USP47-202ENST00000339865 PPP2R1AP30153 589 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 RIPOR2Q9Y4F9 1068 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 GPRASP1Q5JY77 1395 aa14.4□□□□□ -0.1
USP47-202ENST00000339865 GOLGA4Q13439 2230 aaKnown RBP14.4□□□□□ -0.1
USP47-202ENST00000339865 RPSAP08865 295 aaKnown RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 TMEM132EQ6IEE7 984 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ZNF530Q6P9A1 599 aaPredicted RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 KLHDC4Q8TBB5 520 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ASIC1P78348 528 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 CASC4Q6P4E1 433 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 CCDC117Q8IWD4 279 aaPredicted RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 PALM3A6NDB9 673 aaPredicted RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 NBPF7P0C2Y1 421 aaPredicted RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 KRT9P35527 623 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ATP6V1E1P36543 226 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 RAP1GDS1P52306 607 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ATP2A3Q93084 1043 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 CSRNP2Q9H175 543 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 FAM204AQ9H8W3 233 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ACTN4O43707 911 aaKnown RBP14.39□□□□□ -0.11
USP47-202ENST00000339865 ERMNQ8TAM6 284 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 STAG1Q8WVM7 1258 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ARHGAP42A6NI28 874 aa14.39□□□□□ -0.11
USP47-202ENST00000339865 ANKRD20A3Q5VUR7 823 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 KRT5P13647 590 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 ATP6V1AP38606 617 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 HHATQ5VTY9 493 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 NUDCD3Q8IVD9 361 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 RASEFQ8IZ41 740 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 MRFAP1Q9Y605 127 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 MYCP01106 439 aaPredicted RBP14.38□□□□□ -0.11
USP47-202ENST00000339865 MAN1A1P33908 653 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 SH3BGRP55822 239 aaPredicted RBP14.38□□□□□ -0.11
USP47-202ENST00000339865 DCAF17Q5H9S7 520 aaPredicted RBP14.38□□□□□ -0.11
USP47-202ENST00000339865 USP48Q86UV5 1035 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 KCNG4Q8TDN1 519 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 IFNKQ9P0W0 207 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 PPP1R12AO14974 1030 aaPredicted RBP14.38□□□□□ -0.11
USP47-202ENST00000339865 PNISRQ8TF01 805 aaKnown RBP14.38□□□□□ -0.11
USP47-202ENST00000339865 TRIM31Q9BZY9 425 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP47-202ENST00000339865 CNGA1P29973 690 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 MFSD6Q6ZSS7 791 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 MSANTD4Q8NCY6 345 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 FAM200AQ8TCP9 573 aa14.38□□□□□ -0.11
USP47-202ENST00000339865 SKAP1Q86WV1 359 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 TMTC4Q5T4D3 741 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 C8orf74Q6P047 294 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 NOD1Q9Y239 953 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 GOLGA6BA6NDN3 693 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms