RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PAG1Q9NWQ8 432 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 ATP6V0A2Q9Y487 856 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 NESP48681 1621 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 RTL1A6NKG5 1358 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 SNX16P57768 344 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 DAAM2Q86T65 1068 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 ZC3H12CQ9C0D7 883 aaKnown RBP14.27□□□□□ -0.13
SDC3-201ENST00000336798 GEN1Q17RS7 908 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 NEK11Q8NG66 645 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 RNF34Q969K3 372 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 SMC6Q96SB8 1091 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 GPCPD1Q9NPB8 672 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 TROQ12816 1431 aaPredicted RBP14.26□□□□□ -0.13
SDC3-201ENST00000336798 ZEB2O60315 1214 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 FAM160A1Q05DH4 1040 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 PPP2R5DQ14738 602 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 HAUS7Q99871 368 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 HECW1Q76N89 1606 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 PPP2R5CQ13362 524 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 TTC31Q49AM3 519 aaPredicted RBP14.26□□□□□ -0.13
SDC3-201ENST00000336798 FNBP4Q8N3X1 1017 aaPredicted RBP14.26□□□□□ -0.13
SDC3-201ENST00000336798 KCNG4Q8TDN1 519 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 CCDC77Q9BR77 488 aa14.26□□□□□ -0.13
SDC3-201ENST00000336798 CTAGE9A4FU28 777 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 RNASE9P60153 205 aaKnown RBP14.25□□□□□ -0.13
SDC3-201ENST00000336798 JDP2Q8WYK2 163 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 PFDN4Q9NQP4 134 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 CFAP157Q5JU67 520 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 ANAPC4Q9UJX5 808 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 ATP2A1O14983 1001 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 TMCO4Q5TGY1 634 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 IDI1Q13907 227 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 TTC21BQ7Z4L5 1316 aa14.25□□□□□ -0.13
SDC3-201ENST00000336798 BIRC3Q13489 604 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 DDX12PQ92771 950 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 NAP1L3Q99457 506 aaPredicted RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 NCAPD3P42695 1498 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 FAM135AQ9P2D6 1515 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 TRIM75PA6NK02 468 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 DDX39AO00148 427 aaKnown RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 CWF19L2Q2TBE0 894 aaKnown RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 ZNF569Q5MCW4 686 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 CCDC42Q96M95 316 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 DDB1Q16531 1140 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 CCDC129Q6ZRS4 1044 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 TMTC2Q8N394 836 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 GRM8O00222 908 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 CRCPO75575 148 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 KIF5AQ12840 1032 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 ZNF174Q15697 407 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 FCHSD1Q86WN1 690 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 AGTPBP1Q9UPW5 1226 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 CEP83Q9Y592 693 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 PAXBP1Q9Y5B6 917 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 BMP2KLQ5H9B9 411 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 UBLCP1Q8WVY7 318 aaPredicted RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 SEC62Q99442 399 aaKnown RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 CLSTN2Q9H4D0 955 aa14.24□□□□□ -0.13
SDC3-201ENST00000336798 SUPT6HQ7KZ85 1726 aaKnown RBP14.24□□□□□ -0.13
SDC3-201ENST00000336798 ERCC3P19447 782 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 BRD2P25440 801 aaKnown RBP14.23□□□□□ -0.13
SDC3-201ENST00000336798 TFCP2Q12800 502 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 CCDC117Q8IWD4 279 aaPredicted RBP14.23□□□□□ -0.13
SDC3-201ENST00000336798 CCT6AP40227 531 aaKnown RBP14.23□□□□□ -0.13
SDC3-201ENST00000336798 NOD1Q9Y239 953 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 CCDC169A6NNP5 214 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 POLD1P28340 1107 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 GNAQP50148 359 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 NFATC2IPQ8NCF5 419 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 ARFGAP3Q9NP61 516 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 CCDC171Q6TFL3 1326 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 SPTLC2O15270 562 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 NOS1P29475 1434 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 CD109Q6YHK3 1445 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 PRPHP41219 470 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 LETM2Q2VYF4 491 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 CEP57Q86XR8 500 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 KIFC2Q96AC6 838 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 ESYT1Q9BSJ8 1104 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 VPS18Q9P253 973 aa14.23□□□□□ -0.13
SDC3-201ENST00000336798 IRS4O14654 1257 aaPredicted RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 ZFYP08048 801 aaPredicted RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 HS2ST1Q7LGA3 356 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 MICALL1Q8N3F8 863 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 HGSO14964 777 aaPredicted RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 LDHBP07195 334 aaKnown RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 CTNND2Q9UQB3 1225 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 RTCBQ9Y3I0 505 aaKnown RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 VWA3AA6NCI4 1184 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 SLU7O95391 586 aaKnown RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 LEO1Q8WVC0 666 aaPredicted RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 LMBR1Q8WVP7 490 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 PDE1AP54750 535 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 PPANQ9NQ55 473 aaKnown RBP14.22□□□□□ -0.13
SDC3-201ENST00000336798 CERS3Q8IU89 383 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 ZRANB1Q9UGI0 708 aa14.22□□□□□ -0.13
SDC3-201ENST00000336798 CCDC141Q6ZP82 1450 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 NUCB1Q02818 461 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 GABPAQ06546 454 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 323.1 ms