RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 B4DLN1 442 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 GPAA1O43292 621 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 MRPL12P52815 198 aaKnown RBP7.97□□□□□ -1.13
SF3B1-201ENST00000335508 CREB3L3Q68CJ9 461 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 CCDC102BQ68D86 513 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 CEP89Q96ST8 783 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 USP32Q8NFA0 1604 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 PRC1O43663 620 aa7.96□□□□□ -1.13
SF3B1-201ENST00000335508 DDX11Q96FC9 970 aa7.96□□□□□ -1.13
SF3B1-201ENST00000335508 MBD4O95243 580 aa7.96□□□□□ -1.13
SF3B1-201ENST00000335508 LLPHQ9BRT6 129 aaKnown RBP7.96□□□□□ -1.13
SF3B1-201ENST00000335508 DBNLQ9UJU6 430 aaKnown RBP7.96□□□□□ -1.13
SF3B1-201ENST00000335508 ANGEL1Q9UNK9 670 aaKnown RBP7.96□□□□□ -1.13
SF3B1-201ENST00000335508 RABL6Q3YEC7 729 aaPredicted RBP7.96□□□□□ -1.14
SF3B1-201ENST00000335508 EHMT1Q9H9B1 1298 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 PDE6AP16499 860 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 HSPA4P34932 840 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 TNIP1Q15025 636 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 TXNRD1Q16881 649 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.96□□□□□ -1.14
SF3B1-201ENST00000335508 HAUS7Q99871 368 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 NUP62CLQ9H1M0 184 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 ATP8A2Q9NTI2 1148 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 GNA11P29992 359 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 RTN1Q16799 776 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 FILIP1LQ4L180 1135 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 MARCH10Q8NA82 808 aaPredicted RBP7.96□□□□□ -1.14
SF3B1-201ENST00000335508 SPATA31A5Q5VU36 1347 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 SPATA31A7Q8IWB4 1347 aa7.96□□□□□ -1.14
SF3B1-201ENST00000335508 PES1O00541 588 aaKnown RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 SMC2O95347 1197 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 UBA7P41226 1012 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC96Q2M329 555 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 CAVIN1Q6NZI2 390 aaKnown RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 SPATA5Q8NB90 893 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 OTUD7AQ8TE49 926 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 RTL9Q8NET4 1388 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 CLSTN1O94985 981 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TMEM266Q2M3C6 531 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 SAMD1Q6SPF0 538 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC17Q96LX7 622 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TCP11L1Q9NUJ3 509 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 RPAP1Q9BWH6 1393 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TMEM131LA2VDJ0 1609 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 CUL5Q93034 780 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 NBPF26B4DH59 902 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 KDM4AO75164 1064 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TRIM37O94972 964 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 SSRP1Q08945 709 aaKnown RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 MFSD14BQ5SR56 506 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 NBPF10Q6P3W6 841 aaKnown RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 NBPF15Q8N660 670 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF219Q9P2Y4 722 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-201ENST00000335508 ABCC12Q96J65 1359 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TSPY3P0CV98 308 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TSPY8P0CW00 308 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 KLHL40Q2TBA0 621 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 KCNG4Q8TDN1 519 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 TNMDQ9H2S6 317 aa7.95□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF804BA4D1E1 1349 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 EIF6P56537 245 aaKnown RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 KANK3Q6NY19 840 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 BRAPQ7Z569 592 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF594Q96JF6 807 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 BRIP1Q9BX63 1249 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 MAP3K11Q16584 847 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 PODNQ7Z5L7 613 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 TEKT1Q969V4 418 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 GREM2Q9H772 168 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 CPS1P31327 1500 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 OFD1O75665 1012 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 IFIT1BQ5T764 474 aaKnown RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 PLA2G12BQ9BX93 195 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 KRT18P05783 430 aaKnown RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 MMP10P09238 476 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 HSPA1LP34931 641 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 NIM1KQ8IY84 436 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 LRRC27Q9C0I9 530 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 BSDC1Q9NW68 430 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 NLRP5P59047 1200 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 SF3B3Q15393 1217 aaKnown RBP7.94□□□□□ -1.14
SF3B1-201ENST00000335508 RILPL1Q5EBL4 403 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 SKAP1Q86WV1 359 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 MAGEB6Q8N7X4 407 aa7.94□□□□□ -1.14
SF3B1-201ENST00000335508 LRRIQ1Q96JM4 1722 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 ZAP70P43403 619 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 AKNAD1Q5T1N1 836 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 MAP4K1Q92918 833 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 LZTS2Q9BRK4 669 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 ARPP21Q9UBL0 812 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 CLTCQ00610 1675 aaKnown RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 PREX1Q8TCU6 1659 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 CEP152O94986 1710 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 TRIM75PA6NK02 468 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 NASPP49321 788 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 CHRNDQ07001 517 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 MAPK8IP2Q13387 824 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 GRAPQ13588 217 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 GRAPLQ8TC17 118 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 LUC7LQ9NQ29 371 aaKnown RBP7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms