RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RLBP1P12271 317 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 ARL1P40616 181 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-201ENST00000328333 PAK2Q13177 524 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 PPP1R12CQ9BZL4 782 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 IL1RAPL2Q9NP60 686 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 GUCA1BQ9UMX6 200 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 TRIM27P14373 513 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 BRD3Q15059 726 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 GTF3C6Q969F1 213 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 GRIN2BQ13224 1484 aa16.04■□□□□ 0.16
COL7A1-201ENST00000328333 RANBP6O60518 1105 aaKnown RBP16.03■□□□□ 0.16
COL7A1-201ENST00000328333 HIP1RO75146 1068 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 CCDC122Q5T0U0 273 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 ZSCAN29Q8IWY8 852 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-201ENST00000328333 KCNH5Q8NCM2 988 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 PPP1R9BQ96SB3 815 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 ZMYM3Q14202 1370 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 MYL6BP14649 208 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 LGSNQ5TDP6 509 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 TMX3Q96JJ7 454 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 USP16Q9Y5T5 823 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 PRR16Q569H4 304 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 STK24Q9Y6E0 443 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 GCKP35557 465 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 IFT81Q8WYA0 676 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 TTC41PQ6P2S7 1318 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 NOX5Q96PH1 765 aa16.03■□□□□ 0.16
COL7A1-201ENST00000328333 DBF4Q9UBU7 674 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-201ENST00000328333 SPTLC2O15270 562 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 MICU3Q86XE3 530 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 CCDC170Q8IYT3 715 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 TRIM4Q9C037 500 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 KIF1BO60333 1816 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 TROQ12816 1431 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-201ENST00000328333 MINDY4BA8MYZ0 360 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 STK10O94804 968 aaKnown RBP16.02■□□□□ 0.16
COL7A1-201ENST00000328333 CALM1P0DP23 149 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 CALM2P0DP24 149 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 CALM3P0DP25 149 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 GSTO1P78417 241 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 ARMC9Q7Z3E5 817 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 CCDC82Q8N4S0 544 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 KCNK9Q9NPC2 374 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 PUF60Q9UHX1 559 aaKnown RBP16.02■□□□□ 0.16
COL7A1-201ENST00000328333 ZGPATQ8N5A5 531 aaKnown RBP16.02■□□□□ 0.16
COL7A1-201ENST00000328333 KAT14Q9H8E8 782 aa16.02■□□□□ 0.16
COL7A1-201ENST00000328333 NUP58Q9BVL2 599 aa16.02■□□□□ 0.15
COL7A1-201ENST00000328333 NUCKS1Q9H1E3 243 aaKnown RBP16.02■□□□□ 0.15
COL7A1-201ENST00000328333 MUM1Q2TAK8 710 aa16.02■□□□□ 0.15
COL7A1-201ENST00000328333 DENND2CQ68D51 928 aa16.02■□□□□ 0.15
COL7A1-201ENST00000328333 DRC3Q9H069 523 aa16.02■□□□□ 0.15
COL7A1-201ENST00000328333 ABCF2Q9UG63 623 aa16.02■□□□□ 0.15
COL7A1-201ENST00000328333 GOLGA5Q8TBA6 731 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 CNPY2Q9Y2B0 182 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL7A1-201ENST00000328333 GOLGA8QA0A0J9YX86 632 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 GOLGA8OA6NCC3 632 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 GOLGA8NF8WBI6 632 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 PRAM1Q96QH2 718 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 MAK16Q9BXY0 300 aaKnown RBP16.01■□□□□ 0.15
COL7A1-201ENST00000328333 ARHGAP6O43182 974 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 CABS1Q96KC9 395 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 TACC3Q9Y6A5 838 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 FAM160A1Q05DH4 1040 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 TAF7Q15545 349 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-201ENST00000328333 HPDP32754 393 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-201ENST00000328333 KLHL34Q8N239 644 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 ESR2Q92731 530 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 RAB17Q9H0T7 212 aa16.01■□□□□ 0.15
COL7A1-201ENST00000328333 PRIM1P49642 420 aaKnown RBP16■□□□□ 0.15
COL7A1-201ENST00000328333 ZNF569Q5MCW4 686 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 CDK19Q9BWU1 502 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 SCAF11Q99590 1463 aaKnown RBP16■□□□□ 0.15
COL7A1-201ENST00000328333 TRIM75PA6NK02 468 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 HS2ST1Q7LGA3 356 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 ARHGEF2Q92974 986 aaKnown RBP16■□□□□ 0.15
COL7A1-201ENST00000328333 PHACTR2O75167 634 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 GNAT2P19087 354 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 MYL5Q02045 173 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 FCHSD1Q86WN1 690 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 P3H4Q92791 437 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 RNF216Q9NWF9 866 aaPredicted RBP16■□□□□ 0.15
COL7A1-201ENST00000328333 ZBTB43O43298 467 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 RHOXF2BP0C7M4 288 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 RHOXF2Q9BQY4 288 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 CFAP221Q4G0U5 840 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 IQUBQ8NA54 791 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 TMX1Q9H3N1 280 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 CAPZA3Q96KX2 299 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 HSPA1LP34931 641 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 BOLA2Q9H3K6 86 aa16■□□□□ 0.15
COL7A1-201ENST00000328333 GIPC1O14908 333 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 ASIC1P78348 528 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 SMARCC2Q8TAQ2 1214 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 CCT6BQ92526 530 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 WTAPQ15007 396 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 DDX27Q96GQ7 796 aaKnown RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 HLA-DOAP06340 250 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 DACT1Q9NYF0 836 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms