RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ARAP2Q8WZ64 1704 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 PTGER2P43116 358 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 RBM10P98175 930 aaKnown RBP12.08□□□□□ -0.48
HMGB3-201ENST00000325307 C22orf23Q9BZE7 217 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 PIM2Q9P1W9 311 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 LRP2BPQ9P2M1 347 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 CHGBP05060 677 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 TBC1D32Q96NH3 1257 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 SGIP1Q9BQI5 828 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 A0A1B0GUL6 1792 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 A0A0D9SFI3 127 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 A0A0U1RQG5 324 aaPredicted RBP12.08□□□□□ -0.48
HMGB3-201ENST00000325307 SGSM2O43147 1006 aa12.08□□□□□ -0.48
HMGB3-201ENST00000325307 CACNA1SQ13698 1873 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 SEMA3EO15041 775 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 RNF113AO15541 343 aaKnown RBP12.07□□□□□ -0.48
HMGB3-201ENST00000325307 SLFNL1Q499Z3 407 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 SLC9C2Q5TAH2 1124 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 EYA3Q99504 573 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 MAP3K12Q12852 859 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 ZSCAN25Q6NSZ9 544 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 IL25Q9H293 177 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 CD2APQ9Y5K6 639 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 SLX4Q8IY92 1834 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 KCNA3P22001 575 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 CC2D2BQ6DHV5 1058 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 C15orf52Q6ZUT6 534 aaKnown RBP12.07□□□□□ -0.48
HMGB3-201ENST00000325307 RAI14Q9P0K7 980 aa12.07□□□□□ -0.48
HMGB3-201ENST00000325307 ZFYP08048 801 aaPredicted RBP12.06□□□□□ -0.48
HMGB3-201ENST00000325307 DALRD3Q5D0E6 543 aaKnown RBP12.06□□□□□ -0.48
HMGB3-201ENST00000325307 FBXW7Q969H0 707 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 CD209Q9NNX6 404 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 RFX7Q2KHR2 1363 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 MED23Q9ULK4 1368 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 NBR1Q14596 966 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 CCDC93Q567U6 631 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 SEC62Q99442 399 aaKnown RBP12.06□□□□□ -0.48
HMGB3-201ENST00000325307 IRS2Q9Y4H2 1338 aa12.06□□□□□ -0.48
HMGB3-201ENST00000325307 DOK7Q18PE1 504 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 MCMDC2Q4G0Z9 681 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 C7orf43Q8WVR3 580 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 USP26Q9BXU7 913 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 RAD50Q92878 1312 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 CCDC129Q6ZRS4 1044 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 MAGEB6Q8N7X4 407 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 TDRD7Q8NHU6 1098 aaKnown RBP12.05□□□□□ -0.48
HMGB3-201ENST00000325307 BCS1LQ9Y276 419 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 LRRC37AA6NMS7 1700 aa12.05□□□□□ -0.48
HMGB3-201ENST00000325307 PDE6AP16499 860 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 ZMYM1Q5SVZ6 1142 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 RTKN2Q8IZC4 609 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 AKAP11Q9UKA4 1901 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 COL1A1P02452 1464 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-201ENST00000325307 MCCP23508 829 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 ZNF589Q86UQ0 364 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-201ENST00000325307 SUPT20HQ8NEM7 779 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 HELLSQ9NRZ9 838 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 ZNF532Q9HCE3 1301 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 ADD2P35612 726 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 TICAM2Q86XR7 235 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 WDR66Q8TBY9 1149 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 APPBP2Q92624 585 aa12.04□□□□□ -0.48
HMGB3-201ENST00000325307 SOGA3Q5TF21 947 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 DBNDD1Q9H9R9 158 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 AOC3Q16853 763 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 NLGN2Q8NFZ4 835 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 OSBP2Q969R2 916 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 PPIP5K2O43314 1243 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 IL1R1P14778 569 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 GRIPAP1Q4V328 841 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 SPTY2D1Q68D10 685 aaPredicted RBP12.03□□□□□ -0.48
HMGB3-201ENST00000325307 ZGPATQ8N5A5 531 aaKnown RBP12.03□□□□□ -0.48
HMGB3-201ENST00000325307 MAST3O60307 1309 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 CCDC171Q6TFL3 1326 aa12.03□□□□□ -0.48
HMGB3-201ENST00000325307 M0R2C6 588 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 CYP7A1P22680 504 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 GTF2IP78347 998 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 PTH1RQ03431 593 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 UBE3CQ15386 1083 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 DZIP1Q86YF9 867 aaKnown RBP12.02□□□□□ -0.48
HMGB3-201ENST00000325307 HOMEZQ8IX15 550 aa12.02□□□□□ -0.48
HMGB3-201ENST00000325307 LSG1Q9H089 658 aaKnown RBP12.02□□□□□ -0.48
HMGB3-201ENST00000325307 PDS5AQ29RF7 1337 aaKnown RBP12.02□□□□□ -0.48
HMGB3-201ENST00000325307 PRDX5P30044 214 aa12.02□□□□□ -0.49
HMGB3-201ENST00000325307 PUS7LQ9H0K6 701 aaKnown RBP12.02□□□□□ -0.49
HMGB3-201ENST00000325307 GOLGB1Q14789 3259 aaKnown RBP12.02□□□□□ -0.49
HMGB3-201ENST00000325307 LDHBP07195 334 aaKnown RBP12.02□□□□□ -0.49
HMGB3-201ENST00000325307 NAA16Q6N069 864 aaPredicted RBP12.02□□□□□ -0.49
HMGB3-201ENST00000325307 AIDAQ96BJ3 306 aa12.02□□□□□ -0.49
HMGB3-201ENST00000325307 RTFDC1Q9BY42 306 aaPredicted RBP12.02□□□□□ -0.49
HMGB3-201ENST00000325307 KIF13BQ9NQT8 1826 aa12.01□□□□□ -0.49
HMGB3-201ENST00000325307 DUOX1Q9NRD9 1551 aa12.01□□□□□ -0.49
HMGB3-201ENST00000325307 RBM25P49756 843 aaKnown RBP12.01□□□□□ -0.49
HMGB3-201ENST00000325307 MFSD14BQ5SR56 506 aa12.01□□□□□ -0.49
HMGB3-201ENST00000325307 FHDC1Q9C0D6 1143 aaPredicted RBP12.01□□□□□ -0.49
HMGB3-201ENST00000325307 ZNF277Q9NRM2 450 aaPredicted RBP12.01□□□□□ -0.49
HMGB3-201ENST00000325307 GPAA1O43292 621 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 MECOMQ03112 1051 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 LTBP1Q14766 1721 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms