RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CRKLP46109 303 aaKnown RBP18.9■□□□□ 0.62
USHBP1-202ENST00000324554 CLSTN2Q9H4D0 955 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 CBX8Q9HC52 389 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 DZIP3Q86Y13 1208 aaKnown RBP18.89■□□□□ 0.61
USHBP1-202ENST00000324554 PTPDC1A2A3K4 754 aa18.89■□□□□ 0.61
USHBP1-202ENST00000324554 FKBP4Q02790 459 aaKnown RBP eCLIP18.89■□□□□ 0.61
USHBP1-202ENST00000324554 INTS5Q6P9B9 1019 aaKnown RBP18.89■□□□□ 0.61
USHBP1-202ENST00000324554 OSBP2Q969R2 916 aa18.89■□□□□ 0.61
USHBP1-202ENST00000324554 ADORA1P30542 326 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 HMGN5P82970 282 aaKnown RBP18.88■□□□□ 0.61
USHBP1-202ENST00000324554 CCDC158Q5M9N0 1113 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 GIGYF2Q6Y7W6 1299 aaKnown RBP18.88■□□□□ 0.61
USHBP1-202ENST00000324554 BICD2Q8TD16 824 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 FBXO3Q9UK99 471 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 TRIM28Q13263 835 aaKnown RBP18.88■□□□□ 0.61
USHBP1-202ENST00000324554 NAA16Q6N069 864 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-202ENST00000324554 XAGE2Q96GT9 111 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 ZMYND15Q9H091 742 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 CFAP45Q9UL16 551 aa18.88■□□□□ 0.61
USHBP1-202ENST00000324554 SPATA31A6Q5VVP1 1343 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 SALL1Q9NSC2 1324 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 PTGS1P23219 599 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 GTF2F1P35269 517 aaKnown RBP eCLIP18.87■□□□□ 0.61
USHBP1-202ENST00000324554 CCT2P78371 535 aaKnown RBP18.87■□□□□ 0.61
USHBP1-202ENST00000324554 TTC39AQ5SRH9 613 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 TTLL5Q6EMB2 1281 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 ARID3AQ99856 593 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 AKAP2Q9Y2D5 859 aa18.87■□□□□ 0.61
USHBP1-202ENST00000324554 TPM3P06753 285 aa18.86■□□□□ 0.61
USHBP1-202ENST00000324554 ADD1P35611 737 aaKnown RBP18.86■□□□□ 0.61
USHBP1-202ENST00000324554 CHST3Q7LGC8 479 aa18.86■□□□□ 0.61
USHBP1-202ENST00000324554 NCOA5Q9HCD5 579 aaKnown RBP18.86■□□□□ 0.61
USHBP1-202ENST00000324554 AFF2P51816 1311 aa18.86■□□□□ 0.61
USHBP1-202ENST00000324554 FOXP2O15409 715 aa18.86■□□□□ 0.61
USHBP1-202ENST00000324554 PCCAP05165 728 aaPredicted RBP18.86■□□□□ 0.61
USHBP1-202ENST00000324554 PLA2G12BQ9BX93 195 aa18.86■□□□□ 0.61
USHBP1-202ENST00000324554 GOLGA6L6A8MZA4 724 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 PDIA3P30101 505 aaKnown RBP18.85■□□□□ 0.61
USHBP1-202ENST00000324554 GORABQ5T7V8 394 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 ZNF710Q8N1W2 664 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 ZNF274Q96GC6 653 aaPredicted RBP18.85■□□□□ 0.61
USHBP1-202ENST00000324554 CCDC87Q9NVE4 849 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 MYH15Q9Y2K3 1946 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 CSF1RP07333 972 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 SCARF1Q14162 830 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 MTERF4Q7Z6M4 381 aaKnown RBP18.85■□□□□ 0.61
USHBP1-202ENST00000324554 NLRP10Q86W26 655 aa18.85■□□□□ 0.61
USHBP1-202ENST00000324554 IL6STP40189 918 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 FOSBP53539 338 aa18.84■□□□□ 0.61
USHBP1-202ENST00000324554 CEBPZQ03701 1054 aaKnown RBP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 LRRFIP1Q32MZ4 808 aaKnown RBP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 ZBTB38Q8NAP3 1195 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 DNAJC25Q9H1X3 360 aa18.84■□□□□ 0.61
USHBP1-202ENST00000324554 KIF3AQ9Y496 699 aa18.84■□□□□ 0.61
USHBP1-202ENST00000324554 FBXL16Q8N461 479 aa18.84■□□□□ 0.61
USHBP1-202ENST00000324554 FTOQ9C0B1 505 aaKnown RBP eCLIP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 NRBP1Q9UHY1 535 aa18.84■□□□□ 0.61
USHBP1-202ENST00000324554 NAP1L2Q9ULW6 460 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-202ENST00000324554 ZFYP08048 801 aaPredicted RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 EIF5P55010 431 aaKnown RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 IFIT5Q13325 482 aaKnown RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 WASHC4Q2M389 1173 aa18.83■□□□□ 0.61
USHBP1-202ENST00000324554 TAF7LQ5H9L4 462 aa18.83■□□□□ 0.61
USHBP1-202ENST00000324554 TDRD7Q8NHU6 1098 aaKnown RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 GJD4Q96KN9 370 aaPredicted RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 TRMT112Q9UI30 125 aaKnown RBP18.83■□□□□ 0.61
USHBP1-202ENST00000324554 ZNF165P49910 485 aa18.83■□□□□ 0.6
USHBP1-202ENST00000324554 CCDC186Q7Z3E2 898 aa18.83■□□□□ 0.6
USHBP1-202ENST00000324554 PLA2G4DQ86XP0 818 aa18.83■□□□□ 0.6
USHBP1-202ENST00000324554 RIC1Q4ADV7 1423 aa18.83■□□□□ 0.6
USHBP1-202ENST00000324554 UBN2Q6ZU65 1347 aa18.83■□□□□ 0.6
USHBP1-202ENST00000324554 PPFIA3O75145 1194 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 ZAP70P43403 619 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 EVCP57679 992 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 LRMPQ12912 555 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 CTNNA3Q9UI47 895 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 RCOR1Q9UKL0 485 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 CARMIL3Q8ND23 1372 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 ZNF75DP51815 510 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 HAND2P61296 217 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 TRIM5Q9C035 493 aa18.82■□□□□ 0.6
USHBP1-202ENST00000324554 ABCC12Q96J65 1359 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 IMMTQ16891 758 aaKnown RBP18.81■□□□□ 0.6
USHBP1-202ENST00000324554 PI16Q6UXB8 463 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 LINC00116Q8NCU8 138 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 APPBP2Q92624 585 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 USP28Q96RU2 1077 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 PUS7LQ9H0K6 701 aaKnown RBP18.81■□□□□ 0.6
USHBP1-202ENST00000324554 MYH14Q7Z406 1995 aaKnown RBP18.81■□□□□ 0.6
USHBP1-202ENST00000324554 FGAP02671 866 aa18.81■□□□□ 0.6
USHBP1-202ENST00000324554 GPHNQ9NQX3 736 aaPredicted RBP18.81■□□□□ 0.6
USHBP1-202ENST00000324554 FDPSP14324 419 aaKnown RBP18.8■□□□□ 0.6
USHBP1-202ENST00000324554 HSP90AB3PQ58FF7 597 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
USHBP1-202ENST00000324554 GUCY1B3Q02153 619 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 ATP2B3Q16720 1220 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 DRC7Q8IY82 874 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 CHMP4CQ96CF2 233 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 RIPOR2Q9Y4F9 1068 aa18.8■□□□□ 0.6
USHBP1-202ENST00000324554 CDHR2Q9BYE9 1310 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms