RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 NCBP1Q09161 790 aaKnown RBP12.21□□□□□ -0.46
COL3A1-202ENST00000317840 LRRC24Q50LG9 513 aa12.21□□□□□ -0.46
COL3A1-202ENST00000317840 CCAR2Q8N163 923 aaKnown RBP12.21□□□□□ -0.46
COL3A1-202ENST00000317840 MPHOSPH8Q99549 860 aa12.21□□□□□ -0.46
COL3A1-202ENST00000317840 PCDHA7Q9UN72 937 aa12.21□□□□□ -0.46
COL3A1-202ENST00000317840 USP27XA6NNY8 438 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 ZNF213O14771 459 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 IDH1O75874 414 aaKnown RBP12.2□□□□□ -0.46
COL3A1-202ENST00000317840 PDIA3P30101 505 aaKnown RBP12.2□□□□□ -0.46
COL3A1-202ENST00000317840 GSDMDP57764 484 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 IFIT5Q13325 482 aaKnown RBP12.2□□□□□ -0.46
COL3A1-202ENST00000317840 LDHAL6AQ6ZMR3 332 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 MNS1Q8NEH6 495 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 HELLSQ9NRZ9 838 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 A0A0G2JLW4 131 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 TSGA10IPQ3SY00 556 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 GJB4Q9NTQ9 266 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 CCDC24Q8N4L8 307 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 MRFAP1L1Q96HT8 127 aa12.2□□□□□ -0.46
COL3A1-202ENST00000317840 IQSEC3Q9UPP2 1182 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-202ENST00000317840 MICU3Q86XE3 530 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 PLBD2Q8NHP8 589 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 KCNG4Q8TDN1 519 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 NDUFA8P51970 172 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 FAM98CQ17RN3 349 aaKnown RBP12.19□□□□□ -0.46
COL3A1-202ENST00000317840 USPL1Q5W0Q7 1092 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 OLFM4Q6UX06 510 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 CCDC82Q8N4S0 544 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 FEZ1Q99689 392 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 UBR1Q8IWV7 1749 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 ZNF609O15014 1411 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 EYA2O00167 538 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 ELF2Q15723 593 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 DPCR1Q3MIW9 517 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 SYT10Q6XYQ8 523 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 KLHL34Q8N239 644 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 DSCC1Q9BVC3 393 aa12.19□□□□□ -0.46
COL3A1-202ENST00000317840 DMTNQ08495 405 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 RRP12Q5JTH9 1297 aaKnown RBP12.18□□□□□ -0.46
COL3A1-202ENST00000317840 XPO4Q9C0E2 1151 aaKnown RBP12.18□□□□□ -0.46
COL3A1-202ENST00000317840 TOM1O60784 492 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 IQCB1Q15051 598 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 CREBRFQ8IUR6 639 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 NCOA7Q8NI08 942 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 PUS3Q9BZE2 481 aaKnown RBP12.18□□□□□ -0.46
COL3A1-202ENST00000317840 GTPBP4Q9BZE4 634 aaKnown RBP12.18□□□□□ -0.46
COL3A1-202ENST00000317840 ALDH8A1Q9H2A2 487 aaPredicted RBP12.18□□□□□ -0.46
COL3A1-202ENST00000317840 OGFRQ9NZT2 677 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 CLIC4Q9Y696 253 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 PXDNQ92626 1479 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 JMYQ8N9B5 988 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 MAST3O60307 1309 aa12.18□□□□□ -0.46
COL3A1-202ENST00000317840 SLU7O95391 586 aaKnown RBP12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ZSCAN20P17040 1043 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-202ENST00000317840 SYKP43405 635 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 TMX1Q9H3N1 280 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 UTYO14607 1347 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 WDR17Q8IZU2 1322 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ERICH4A6NGS2 130 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ZNF202O95125 648 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ATL3Q6DD88 541 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ADALQ6DHV7 355 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 SMARCC2Q8TAQ2 1214 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 KIAA1468Q9P260 1216 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 KIF2AO00139 706 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-202ENST00000317840 URI1O94763 535 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-202ENST00000317840 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.17□□□□□ -0.46
COL3A1-202ENST00000317840 DNAI1Q9UI46 699 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 ARHGAP23Q9P227 1491 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 RGPD1P0DJD0 1748 aa12.17□□□□□ -0.46
COL3A1-202ENST00000317840 CARMIL3Q8ND23 1372 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 KDM4FA0A1W2PPD8 638 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 CTDNEP1O95476 244 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 ZMYM1Q5SVZ6 1142 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 DZIP3Q86Y13 1208 aaKnown RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 ZNF274Q96GC6 653 aaPredicted RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 ALG1Q9BT22 464 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 XRN1Q8IZH2 1706 aaKnown RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 RFX5P48382 616 aaPredicted RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 UBXN4Q92575 508 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 OSBP2Q969R2 916 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 ABCF2Q9UG63 623 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 AKAP2Q9Y2D5 859 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 CACNA1FO60840 1977 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 METAP2P50579 478 aaKnown RBP eCLIP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 UBASH3AP57075 661 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 MYSM1Q5VVJ2 828 aa12.16□□□□□ -0.46
COL3A1-202ENST00000317840 RBM43Q6ZSC3 357 aaKnown RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 FAM208AQ9UK61 1670 aaKnown RBP12.16□□□□□ -0.46
COL3A1-202ENST00000317840 M0R2C6 588 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 CTIFO43310 598 aaKnown RBP12.15□□□□□ -0.46
COL3A1-202ENST00000317840 FGAP02671 866 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 SAFBQ15424 915 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL3A1-202ENST00000317840 PTPN21Q16825 1174 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 KRT222Q8N1A0 295 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 CCDC150Q8NCX0 1101 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 ZNF397Q8NF99 534 aaPredicted RBP12.15□□□□□ -0.46
COL3A1-202ENST00000317840 PIK3C2AO00443 1686 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 SH3TC1Q8TE82 1336 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 CDC25BP30305 580 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms