RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TDRD7Q8NHU6 1098 aaKnown RBP22.19■■□□□ 1.14
HMGA1-201ENST00000311487 SBF1O95248 1867 aa22.19■■□□□ 1.14
HMGA1-201ENST00000311487 IL1R1P14778 569 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 ZAP70P43403 619 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 PI4K2BQ8TCG2 481 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 ARAP2Q8WZ64 1704 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 ANTXR1Q9H6X2 564 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 GNL3LQ9NVN8 582 aaKnown RBP22.18■■□□□ 1.14
HMGA1-201ENST00000311487 TTLL5Q6EMB2 1281 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 SPATA5Q8NB90 893 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 ZNRF3Q9ULT6 936 aa22.18■■□□□ 1.14
HMGA1-201ENST00000311487 SCN9AQ15858 1988 aa22.17■■□□□ 1.14
HMGA1-201ENST00000311487 ARID4AP29374 1257 aaPredicted RBP22.17■■□□□ 1.14
HMGA1-201ENST00000311487 GPATCH3Q96I76 525 aa22.17■■□□□ 1.14
HMGA1-201ENST00000311487 ZBTB12Q9Y330 459 aaPredicted RBP22.17■■□□□ 1.14
HMGA1-201ENST00000311487 GRIK5Q16478 980 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 PODNQ7Z5L7 613 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 GJA3Q9Y6H8 435 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 ZNF541Q9H0D2 1346 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 F8W031 263 aaPredicted RBP22.16■■□□□ 1.14
HMGA1-201ENST00000311487 GOLIM4O00461 696 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 PSMD14O00487 310 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 ATP5JP18859 108 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 CXCL9Q07325 125 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 ABCF2Q9UG63 623 aa22.16■■□□□ 1.14
HMGA1-201ENST00000311487 UQCRFS1P1P0C7P4 283 aa22.15■■□□□ 1.14
HMGA1-201ENST00000311487 CYP2E1P05181 493 aaPredicted RBP22.14■■□□□ 1.14
HMGA1-201ENST00000311487 VPS33BQ9H267 617 aa22.14■■□□□ 1.14
HMGA1-201ENST00000311487 STAP2Q9UGK3 403 aa22.14■■□□□ 1.14
HMGA1-201ENST00000311487 CHGBP05060 677 aa22.14■■□□□ 1.13
HMGA1-201ENST00000311487 DENND2AQ9ULE3 1009 aa22.14■■□□□ 1.13
HMGA1-201ENST00000311487 TTC41PQ6P2S7 1318 aa22.14■■□□□ 1.13
HMGA1-201ENST00000311487 USP17L3A6NCW0 530 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 USP17L4A6NCW7 530 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 FZD9O00144 591 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 MFSD14BQ5SR56 506 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 USP17L1Q7RTZ2 530 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 CERS5Q8N5B7 392 aa22.13■■□□□ 1.13
HMGA1-201ENST00000311487 PIH1D3Q9NQM4 214 aaKnown RBP22.13■■□□□ 1.13
HMGA1-201ENST00000311487 TRIM6-TRIM34B2RNG4 842 aa22.12■■□□□ 1.13
HMGA1-201ENST00000311487 SLFNL1Q499Z3 407 aa22.12■■□□□ 1.13
HMGA1-201ENST00000311487 RILPL2Q969X0 211 aa22.12■■□□□ 1.13
HMGA1-201ENST00000311487 ERC2O15083 957 aa22.12■■□□□ 1.13
HMGA1-201ENST00000311487 GLRX3O76003 335 aaKnown RBP22.12■■□□□ 1.13
HMGA1-201ENST00000311487 GSPT1P15170 499 aaKnown RBP22.12■■□□□ 1.13
HMGA1-201ENST00000311487 EIF6P56537 245 aaKnown RBP22.12■■□□□ 1.13
HMGA1-201ENST00000311487 HAUS7Q99871 368 aa22.12■■□□□ 1.13
HMGA1-201ENST00000311487 AKAP11Q9UKA4 1901 aa22.11■■□□□ 1.13
HMGA1-201ENST00000311487 SHTN1A0MZ66 631 aa22.11■■□□□ 1.13
HMGA1-201ENST00000311487 DDNO94850 711 aaPredicted RBP22.11■■□□□ 1.13
HMGA1-201ENST00000311487 PRDX5P30044 214 aa22.11■■□□□ 1.13
HMGA1-201ENST00000311487 KIAA0825Q8IV33 1275 aa22.11■■□□□ 1.13
HMGA1-201ENST00000311487 PAG1Q9NWQ8 432 aa22.11■■□□□ 1.13
HMGA1-201ENST00000311487 DACT2Q5SW24 774 aa22.1■■□□□ 1.13
HMGA1-201ENST00000311487 CIAPIN1Q6FI81 312 aa22.1■■□□□ 1.13
HMGA1-201ENST00000311487 ZNF512BQ96KM6 892 aaPredicted RBP22.1■■□□□ 1.13
HMGA1-201ENST00000311487 MYH13Q9UKX3 1938 aa22.09■■□□□ 1.13
HMGA1-201ENST00000311487 IDH1O75874 414 aaKnown RBP22.09■■□□□ 1.13
HMGA1-201ENST00000311487 TTC22Q5TAA0 569 aa22.09■■□□□ 1.13
HMGA1-201ENST00000311487 STRIP1Q5VSL9 837 aa22.09■■□□□ 1.13
HMGA1-201ENST00000311487 OSBPL3Q9H4L5 887 aa22.09■■□□□ 1.13
HMGA1-201ENST00000311487 LRP2BPQ9P2M1 347 aa22.09■■□□□ 1.13
HMGA1-201ENST00000311487 SCNN1DP51172 638 aa22.08■■□□□ 1.13
HMGA1-201ENST00000311487 SEMA3EO15041 775 aa22.08■■□□□ 1.12
HMGA1-201ENST00000311487 ZNF526Q8TF50 670 aaPredicted RBP22.08■■□□□ 1.12
HMGA1-201ENST00000311487 RAI14Q9P0K7 980 aa22.08■■□□□ 1.12
HMGA1-201ENST00000311487 MYO5AQ9Y4I1 1855 aaKnown RBP22.07■■□□□ 1.12
HMGA1-201ENST00000311487 DICER1Q9UPY3 1922 aaKnown RBP22.07■■□□□ 1.12
HMGA1-201ENST00000311487 TIAM2Q8IVF5 1701 aa22.07■■□□□ 1.12
HMGA1-201ENST00000311487 FAM205AQ6ZU69 1335 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 VIL1P09327 827 aaKnown RBP22.06■■□□□ 1.12
HMGA1-201ENST00000311487 RSBN1LQ6PCB5 846 aaPredicted RBP22.06■■□□□ 1.12
HMGA1-201ENST00000311487 WDR66Q8TBY9 1149 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 PCDHAC2Q9Y5I4 1007 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 SDSP20132 328 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 GMPSP49915 693 aaPredicted RBP22.06■■□□□ 1.12
HMGA1-201ENST00000311487 TNIP1Q15025 636 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 DIXDC1Q155Q3 683 aa22.06■■□□□ 1.12
HMGA1-201ENST00000311487 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.06■■□□□ 1.12
HMGA1-201ENST00000311487 TTF2Q9UNY4 1162 aaKnown RBP22.05■■□□□ 1.12
HMGA1-201ENST00000311487 LDHBP07195 334 aaKnown RBP22.04■■□□□ 1.12
HMGA1-201ENST00000311487 ZNF384Q8TF68 577 aa22.04■■□□□ 1.12
HMGA1-201ENST00000311487 FSD1Q9BTV5 496 aa22.04■■□□□ 1.12
HMGA1-201ENST00000311487 AOX1Q06278 1338 aa22.04■■□□□ 1.12
HMGA1-201ENST00000311487 MECOMQ03112 1051 aa22.04■■□□□ 1.12
HMGA1-201ENST00000311487 ERICH6Q7L0X2 663 aa22.04■■□□□ 1.12
HMGA1-201ENST00000311487 RBM26Q5T8P6 1007 aaKnown RBP22.03■■□□□ 1.12
HMGA1-201ENST00000311487 MAGEB6Q8N7X4 407 aa22.03■■□□□ 1.12
HMGA1-201ENST00000311487 SLC9C2Q5TAH2 1124 aa22.02■■□□□ 1.12
HMGA1-201ENST00000311487 TBC1D22AQ8WUA7 517 aa22.02■■□□□ 1.12
HMGA1-201ENST00000311487 DPY19L2Q6NUT2 758 aa22.02■■□□□ 1.11
HMGA1-201ENST00000311487 ADGRA1Q86SQ6 560 aa22.02■■□□□ 1.11
HMGA1-201ENST00000311487 DZIP1Q86YF9 867 aaKnown RBP22.02■■□□□ 1.11
HMGA1-201ENST00000311487 GPC2Q8N158 579 aa22.02■■□□□ 1.11
HMGA1-201ENST00000311487 ZNF646O15015 1829 aaPredicted RBP22.01■■□□□ 1.11
HMGA1-201ENST00000311487 EGFRP00533 1210 aa22.01■■□□□ 1.11
HMGA1-201ENST00000311487 RBM5P52756 815 aaKnown RBP eCLIP22.01■■□□□ 1.11
HMGA1-201ENST00000311487 CNTROBQ8N137 903 aa22.01■■□□□ 1.11
HMGA1-201ENST00000311487 EVI5LQ96CN4 794 aa22.01■■□□□ 1.11
HMGA1-201ENST00000311487 EPS15P42566 896 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms