RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ZNF274Q96GC6 653 aaPredicted RBP28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 PRDM11Q9NQV5 511 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 STRN4Q9NRL3 753 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 STK38Q15208 465 aa28.49■■■□□ 2.15
SPTSSA-201ENST00000298130 GPTP24298 496 aa28.49■■■□□ 2.15
SPTSSA-201ENST00000298130 ARHGAP30Q7Z6I6 1101 aaPredicted RBP28.49■■■□□ 2.15
SPTSSA-201ENST00000298130 C8orf76Q96K31 380 aa28.49■■■□□ 2.15
SPTSSA-201ENST00000298130 SYTL4Q96C24 671 aaPredicted RBP28.48■■■□□ 2.15
SPTSSA-201ENST00000298130 ORC3Q9UBD5 711 aaPredicted RBP28.48■■■□□ 2.15
SPTSSA-201ENST00000298130 KIF28PB7ZC32 967 aa28.48■■■□□ 2.15
SPTSSA-201ENST00000298130 GPR108Q9NPR9 543 aa28.48■■■□□ 2.15
SPTSSA-201ENST00000298130 MST1RQ04912 1400 aa28.48■■■□□ 2.15
SPTSSA-201ENST00000298130 ANTXR2P58335 489 aa28.47■■■□□ 2.15
SPTSSA-201ENST00000298130 DPCR1Q3MIW9 517 aa28.47■■■□□ 2.15
SPTSSA-201ENST00000298130 MRPS27Q92552 414 aaKnown RBP28.47■■■□□ 2.15
SPTSSA-201ENST00000298130 SKILP12757 684 aa28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 IMMTQ16891 758 aaKnown RBP28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 FMR1NBQ8N0W7 255 aaPredicted RBP28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 HPS5Q9UPZ3 1129 aa28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 CCDC69A6NI79 296 aa28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 MARCKSP29966 332 aaPredicted RBP28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 ANO10Q9NW15 660 aa28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 NOL12Q9UGY1 213 aaKnown RBP eCLIP28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 V9GYY5 206 aaPredicted RBP28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 ALS2Q96Q42 1657 aa28.46■■■□□ 2.15
SPTSSA-201ENST00000298130 CPLX1O14810 134 aa28.45■■■□□ 2.14
SPTSSA-201ENST00000298130 LINC00301Q8NCQ3 95 aa28.45■■■□□ 2.14
SPTSSA-201ENST00000298130 CTAGE5O15320 804 aa28.45■■■□□ 2.14
SPTSSA-201ENST00000298130 INCENPQ9NQS7 918 aa28.45■■■□□ 2.14
SPTSSA-201ENST00000298130 LMTK3Q96Q04 1460 aa28.44■■■□□ 2.14
SPTSSA-201ENST00000298130 NCBP1Q09161 790 aaKnown RBP28.44■■■□□ 2.14
SPTSSA-201ENST00000298130 GPAA1O43292 621 aa28.44■■■□□ 2.14
SPTSSA-201ENST00000298130 CEP57L1Q8IYX8 460 aa28.43■■■□□ 2.14
SPTSSA-201ENST00000298130 SENP2Q9HC62 589 aa28.43■■■□□ 2.14
SPTSSA-201ENST00000298130 UBE2Q2LH0YL09 131 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 CTIFO43310 598 aaKnown RBP28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 APPP05067 770 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 RALYLQ86SE5 291 aaKnown RBP28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 MB21D2Q8IYB1 491 aaPredicted RBP28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 GLI3P10071 1580 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 PTPN21Q16825 1174 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 SARM1Q6SZW1 724 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 MRFAP1L1Q96HT8 127 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 RTEL1Q9NZ71 1219 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 ZNF142P52746 1687 aaPredicted RBP28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 COL18A1P39060 1754 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 SPATA31A3Q5VYP0 1347 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 PCDH11XQ9BZA7 1347 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 PCDH11YQ9BZA8 1340 aa28.42■■■□□ 2.14
SPTSSA-201ENST00000298130 ADALQ6DHV7 355 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 ZNF213O14771 459 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 CIAO1O76071 339 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 CEP135Q66GS9 1140 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 DNAJC10Q8IXB1 793 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 FBXO18Q8NFZ0 1043 aa28.41■■■□□ 2.14
SPTSSA-201ENST00000298130 IGSF3O75054 1194 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 TCIRG1Q13488 830 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 MYSM1Q5VVJ2 828 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 SPTLC2O15270 562 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 SMC2O95347 1197 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 MCAMP43121 646 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 METTL24Q5JXM2 366 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 CCDC112Q8NEF3 446 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 ANKRD7Q92527 254 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 PHKBQ93100 1093 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 MYL10Q9BUA6 226 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 ASAP1Q9ULH1 1129 aa28.4■■■□□ 2.14
SPTSSA-201ENST00000298130 CAVIN2O95810 425 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 IFIT5Q13325 482 aaKnown RBP28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 CTNNA3Q9UI47 895 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 TNS3Q68CZ2 1445 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 SMTNL1A8MU46 457 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 IDH1O75874 414 aaKnown RBP28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 CDC25BP30305 580 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 CCZ1BP86790 482 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 CCZ1P86791 482 aaPredicted RBP28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 STK11IPQ8N1F8 1099 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 ISCA1Q9BUE6 129 aa28.39■■■□□ 2.14
SPTSSA-201ENST00000298130 ZRSR1Q15695 479 aaKnown RBP28.39■■■□□ 2.13
SPTSSA-201ENST00000298130 HLFQ16534 295 aa28.39■■■□□ 2.13
SPTSSA-201ENST00000298130 NBPF11Q86T75 865 aa28.39■■■□□ 2.13
SPTSSA-201ENST00000298130 NCOA7Q8NI08 942 aa28.39■■■□□ 2.13
SPTSSA-201ENST00000298130 SYNE3Q6ZMZ3 975 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 APPBP2Q92624 585 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 NBPF3Q9H094 633 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 GREM2Q9H772 168 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 KIAA1468Q9P260 1216 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 SLC9C2Q5TAH2 1124 aa28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 ZHX1Q9UKY1 873 aaPredicted RBP28.38■■■□□ 2.13
SPTSSA-201ENST00000298130 NPHP1O15259 732 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 WDHD1O75717 1129 aaPredicted RBP28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 LDHAL6AQ6ZMR3 332 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 TBC1D10CQ8IV04 446 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 HELBQ8NG08 1087 aaPredicted RBP28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 IFNKQ9P0W0 207 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 SNAP23O00161 211 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 ZNF202O95125 648 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 CYB5R4Q7L1T6 521 aa28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 XPO4Q9C0E2 1151 aaKnown RBP28.37■■■□□ 2.13
SPTSSA-201ENST00000298130 ERVV-2B6SEH9 535 aa28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms