RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZSCAN16Q9H4T2 348 aaPredicted RBP23.61■■□□□ 1.37
VPS53-201ENST00000291074 AHDC1Q5TGY3 1603 aaPredicted RBP23.61■■□□□ 1.37
VPS53-201ENST00000291074 ADD2P35612 726 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 CCDC102BQ68D86 513 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 PLCB2Q00722 1185 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 SUSD4Q5VX71 490 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 INTS5Q6P9B9 1019 aaKnown RBP23.6■■□□□ 1.37
VPS53-201ENST00000291074 MB21D2Q8IYB1 491 aaPredicted RBP23.6■■□□□ 1.37
VPS53-201ENST00000291074 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.6■■□□□ 1.373e-7■■■■□ 22.8
VPS53-201ENST00000291074 DENND2AQ9ULE3 1009 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 PRC1O43663 620 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 NR1I2O75469 434 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 CCDC192P0DO97 292 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 ADD1P35611 737 aaKnown RBP23.6■■□□□ 1.37
VPS53-201ENST00000291074 EIF5P55010 431 aaKnown RBP23.6■■□□□ 1.37
VPS53-201ENST00000291074 NAA16Q6N069 864 aaPredicted RBP23.6■■□□□ 1.37
VPS53-201ENST00000291074 TNMDQ9H2S6 317 aa23.6■■□□□ 1.37
VPS53-201ENST00000291074 ANTXR2P58335 489 aa23.59■■□□□ 1.37
VPS53-201ENST00000291074 LRP5O75197 1615 aa23.59■■□□□ 1.37
VPS53-201ENST00000291074 AP5Z1O43299 807 aa23.59■■□□□ 1.37
VPS53-201ENST00000291074 ZNF500O60304 480 aaPredicted RBP23.59■■□□□ 1.37
VPS53-201ENST00000291074 CARMIL3Q8ND23 1372 aa23.59■■□□□ 1.37
VPS53-201ENST00000291074 DDX60Q8IY21 1712 aaKnown RBP23.59■■□□□ 1.37
VPS53-201ENST00000291074 KDM4AO75164 1064 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 FDPSP14324 419 aaKnown RBP23.58■■□□□ 1.37
VPS53-201ENST00000291074 DDB1Q16531 1140 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 NKX2-3Q8TAU0 364 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 NBPF3Q9H094 633 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 WWC3Q9ULE0 1092 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.58■■□□□ 1.37
VPS53-201ENST00000291074 ATP6V1AP38606 617 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 CRKLP46109 303 aaKnown RBP23.58■■□□□ 1.37
VPS53-201ENST00000291074 MYH14Q7Z406 1995 aaKnown RBP23.58■■□□□ 1.37
VPS53-201ENST00000291074 CCDC87Q9NVE4 849 aa23.58■■□□□ 1.37
VPS53-201ENST00000291074 SPATA31A1Q5TZJ5 1347 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 ZNF213O14771 459 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 MCM5P33992 734 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 SEC31BQ9NQW1 1179 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 MRVI1Q9Y6F6 885 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 ZNF532Q9HCE3 1301 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 KLF18A0A0U1RQI7 1052 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 TYRO3Q06418 890 aa23.57■■□□□ 1.36
VPS53-201ENST00000291074 ZNF512BQ96KM6 892 aaPredicted RBP23.57■■□□□ 1.36
VPS53-201ENST00000291074 ZNF830Q96NB3 372 aaPredicted RBP23.57■■□□□ 1.36
VPS53-201ENST00000291074 EVCP57679 992 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 PUM3Q15397 648 aaKnown RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 NCOA7Q8NI08 942 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 CLSTN2Q9H4D0 955 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 DDX19AQ9NUU7 478 aaKnown RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 CFAP45Q9UL16 551 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 NRAPQ86VF7 1730 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 OFD1O75665 1012 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 ITPK1Q13572 414 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 RALYLQ86SE5 291 aaKnown RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 FBXL16Q8N461 479 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 MARCH10Q8NA82 808 aaPredicted RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 USP28Q96RU2 1077 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 KIF3AQ9Y496 699 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 GOLGA8BA8MQT2 603 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 PDE6AP16499 860 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 ARID4AP29374 1257 aaPredicted RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 OTUD7BQ6GQQ9 843 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 ILDR1Q86SU0 546 aaPredicted RBP23.56■■□□□ 1.36
VPS53-201ENST00000291074 HPS5Q9UPZ3 1129 aa23.56■■□□□ 1.36
VPS53-201ENST00000291074 PHLPP1O60346 1717 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 ARAP2Q8WZ64 1704 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 FGFR2P21802 821 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 TTF1Q15361 905 aaPredicted RBP23.55■■□□□ 1.36
VPS53-201ENST00000291074 ZSCAN25Q6NSZ9 544 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 TBC1D10CQ8IV04 446 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 LPIN2Q92539 896 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 ATRNO75882 1429 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 APPP05067 770 aa23.55■■□□□ 1.36
VPS53-201ENST00000291074 LOC102724428A0A0B4J2F2 783 aa23.54■■□□□ 1.36
VPS53-201ENST00000291074 SIK1P57059 783 aa23.54■■□□□ 1.36
VPS53-201ENST00000291074 MROH5Q6ZUA9 1318 aa23.54■■□□□ 1.36
VPS53-201ENST00000291074 CAMTA2O94983 1202 aa23.53■■□□□ 1.36
VPS53-201ENST00000291074 UBE3CQ15386 1083 aa23.53■■□□□ 1.36
VPS53-201ENST00000291074 KLHL34Q8N239 644 aa23.53■■□□□ 1.36
VPS53-201ENST00000291074 UTP14AQ9BVJ6 771 aaKnown RBP23.53■■□□□ 1.36
VPS53-201ENST00000291074 GJB4Q9NTQ9 266 aa23.53■■□□□ 1.36
VPS53-201ENST00000291074 TCRBV5S4A2TA0A5A2 114 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 UQCRFS1P1P0C7P4 283 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 ANO6Q4KMQ2 910 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 LUZP1Q86V48 1076 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 FAM200AQ8TCP9 573 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 RCOR1Q9UKL0 485 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 NUTM2BA6NNL0 878 aaPredicted RBP23.52■■□□□ 1.36
VPS53-201ENST00000291074 NUTM2EB1AL46 878 aaPredicted RBP23.52■■□□□ 1.36
VPS53-201ENST00000291074 RASGRF1Q13972 1273 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 RBM43Q6ZSC3 357 aaKnown RBP23.52■■□□□ 1.36
VPS53-201ENST00000291074 NUTM2AQ8IVF1 878 aaPredicted RBP23.52■■□□□ 1.36
VPS53-201ENST00000291074 MPHOSPH8Q99549 860 aa23.52■■□□□ 1.36
VPS53-201ENST00000291074 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.51■■□□□ 1.35
VPS53-201ENST00000291074 CYB5R4Q7L1T6 521 aa23.51■■□□□ 1.35
VPS53-201ENST00000291074 SPATA5Q8NB90 893 aa23.51■■□□□ 1.35
VPS53-201ENST00000291074 TTC12Q9H892 705 aaPredicted RBP23.51■■□□□ 1.35
VPS53-201ENST00000291074 CDCA7Q9BWT1 371 aaPredicted RBP23.51■■□□□ 1.35
VPS53-201ENST00000291074 GOLPH3LQ9H4A5 285 aa23.51■■□□□ 1.35
VPS53-201ENST00000291074 C4AP0C0L4 1744 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms