RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 COPRSQ9NQ92 184 aa11.51□□□□□ -0.57
HMGN1-201ENST00000288344 GPRC5DQ9NZD1 345 aa11.51□□□□□ -0.57
HMGN1-201ENST00000288344 LRRFIP2Q9Y608 721 aaKnown RBP11.51□□□□□ -0.57
HMGN1-201ENST00000288344 SHTN1A0MZ66 631 aa11.5□□□□□ -0.57
HMGN1-201ENST00000288344 ECE2O60344 883 aa11.5□□□□□ -0.57
HMGN1-201ENST00000288344 UBTFL1P0CB47 393 aaPredicted RBP11.5□□□□□ -0.57
HMGN1-201ENST00000288344 IQCA1LA6NCM1 817 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 IL1R1P14778 569 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 EPHX2P34913 555 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 GMPSP49915 693 aaPredicted RBP11.49□□□□□ -0.57
HMGN1-201ENST00000288344 UBE4AQ14139 1066 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 DACT2Q5SW24 774 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 FBXO33Q7Z6M2 555 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 DZIP1LQ8IYY4 767 aaKnown RBP11.49□□□□□ -0.57
HMGN1-201ENST00000288344 FAM84BQ96KN1 310 aaPredicted RBP11.49□□□□□ -0.57
HMGN1-201ENST00000288344 COA1Q9GZY4 146 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 HACL1Q9UJ83 578 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 RCAN3Q9UKA8 241 aa11.49□□□□□ -0.57
HMGN1-201ENST00000288344 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.49□□□□□ -0.57
HMGN1-201ENST00000288344 EYA2O00167 538 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 CIAO1O76071 339 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 PDE8BO95263 885 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 EGFRP00533 1210 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 GNAI3P08754 354 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 ZNF280AP59817 542 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-201ENST00000288344 TNIP1Q15025 636 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 LHX8Q68G74 356 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 DNAJC5GQ8N7S2 189 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 CD209Q9NNX6 404 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 GJA3Q9Y6H8 435 aa11.48□□□□□ -0.57
HMGN1-201ENST00000288344 MROH5Q6ZUA9 1318 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 PASKQ96RG2 1323 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 PNMA6EA0A0J9YXQ4 647 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 HSPA6P17066 643 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 RPS12P25398 132 aaKnown RBP11.47□□□□□ -0.57
HMGN1-201ENST00000288344 IER5LQ5T953 404 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 USP50Q70EL3 339 aaPredicted RBP11.47□□□□□ -0.57
HMGN1-201ENST00000288344 LDHDQ86WU2 507 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 TDRD7Q8NHU6 1098 aaKnown RBP11.47□□□□□ -0.57
HMGN1-201ENST00000288344 PANK1Q8TE04 598 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 CNOT7Q9UIV1 285 aaKnown RBP11.47□□□□□ -0.57
HMGN1-201ENST00000288344 CHMP3Q9Y3E7 222 aa11.47□□□□□ -0.57
HMGN1-201ENST00000288344 PLIN1O60240 522 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 SEC24BO95487 1268 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 GNAI2P04899 355 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 ATP8B2P98198 1209 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 STRIP1Q5VSL9 837 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 RSBN1LQ6PCB5 846 aaPredicted RBP11.46□□□□□ -0.57
HMGN1-201ENST00000288344 PNMA8AQ86V59 439 aaPredicted RBP11.46□□□□□ -0.57
HMGN1-201ENST00000288344 SMC1BQ8NDV3 1235 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 AGBL3Q8NEM8 1001 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 SSH3Q8TE77 659 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 CNNM1Q9NRU3 951 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 ADARB2Q9NS39 739 aaKnown RBP11.46□□□□□ -0.57
HMGN1-201ENST00000288344 PA2G4Q9UQ80 394 aaKnown RBP11.46□□□□□ -0.57
HMGN1-201ENST00000288344 HDAC5Q9UQL6 1122 aa11.46□□□□□ -0.57
HMGN1-201ENST00000288344 POLR2AP24928 1970 aaKnown RBP11.46□□□□□ -0.58
HMGN1-201ENST00000288344 FAM205AQ6ZU69 1335 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 USP17L3A6NCW0 530 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 USP17L4A6NCW7 530 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 SASH1O94885 1247 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 C20orf194Q5TEA3 1177 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 USP17L1Q7RTZ2 530 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 SIRT2Q8IXJ6 389 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 CERS5Q8N5B7 392 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 TRPM4Q8TD43 1214 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 ZC3H15Q8WU90 426 aaKnown RBP11.45□□□□□ -0.58
HMGN1-201ENST00000288344 ZBED3Q96IU2 234 aaPredicted RBP11.45□□□□□ -0.58
HMGN1-201ENST00000288344 MS4A4AQ96JQ5 239 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 MXD3Q9BW11 206 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 ZBTB40Q9NUA8 1239 aa11.45□□□□□ -0.58
HMGN1-201ENST00000288344 NOP58Q9Y2X3 529 aaKnown RBP11.45□□□□□ -0.58
HMGN1-201ENST00000288344 FKBP1AP62942 108 aaKnown RBP11.44□□□□□ -0.58
HMGN1-201ENST00000288344 MKRN3Q13064 507 aaKnown RBP11.44□□□□□ -0.58
HMGN1-201ENST00000288344 PDE3AQ14432 1141 aa11.44□□□□□ -0.58
HMGN1-201ENST00000288344 TTLL5Q6EMB2 1281 aa11.44□□□□□ -0.58
HMGN1-201ENST00000288344 SAMD7Q7Z3H4 446 aa11.44□□□□□ -0.58
HMGN1-201ENST00000288344 KCNV2Q8TDN2 545 aa11.44□□□□□ -0.58
HMGN1-201ENST00000288344 SRGAP3O43295 1099 aa11.43□□□□□ -0.58
HMGN1-201ENST00000288344 IL15P40933 162 aaPredicted RBP11.43□□□□□ -0.58
HMGN1-201ENST00000288344 GYG1P46976 350 aa11.43□□□□□ -0.58
HMGN1-201ENST00000288344 MVPQ14764 893 aaKnown RBP11.43□□□□□ -0.58
HMGN1-201ENST00000288344 TAF7LQ5H9L4 462 aa11.43□□□□□ -0.58
HMGN1-201ENST00000288344 MICALL2Q8IY33 904 aa11.43□□□□□ -0.58
HMGN1-201ENST00000288344 HIBADHP31937 336 aaKnown RBP11.42□□□□□ -0.58
HMGN1-201ENST00000288344 MMP14P50281 582 aa11.42□□□□□ -0.58
HMGN1-201ENST00000288344 METTL24Q5JXM2 366 aa11.42□□□□□ -0.58
HMGN1-201ENST00000288344 MAP1SQ66K74 1059 aaPredicted RBP11.42□□□□□ -0.58
HMGN1-201ENST00000288344 CEP85Q6P2H3 762 aa11.42□□□□□ -0.58
HMGN1-201ENST00000288344 CNTROBQ8N137 903 aa11.42□□□□□ -0.58
HMGN1-201ENST00000288344 H7C1D1 291 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 BCAMP50895 628 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 APLP1P51693 650 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 GTF2IP78347 998 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 FMR1Q06787 632 aaKnown RBP eCLIP11.41□□□□□ -0.582e-6■□□□□ 10.3
HMGN1-201ENST00000288344 PUM3Q15397 648 aaKnown RBP11.41□□□□□ -0.58
HMGN1-201ENST00000288344 GRIK5Q16478 980 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 CST9Q5W186 159 aa11.41□□□□□ -0.58
HMGN1-201ENST00000288344 C16orf71Q8IYS4 520 aaPredicted RBP11.41□□□□□ -0.58
HMGN1-201ENST00000288344 MTMR14Q8NCE2 650 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms