RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 PDIA4P13667 645 aaKnown RBP11.37□□□□□ -0.59
TRIM55-201ENST00000276573 RPS8P62241 208 aaKnown RBP11.37□□□□□ -0.59
TRIM55-201ENST00000276573 MAP3K12Q12852 859 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 CELF1Q92879 486 aaKnown RBP11.37□□□□□ -0.59
TRIM55-201ENST00000276573 AGXT2Q9BYV1 514 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 WWC3Q9ULE0 1092 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 TAF1LQ8IZX4 1826 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 COL4A1P02462 1669 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 FSD2A1L4K1 749 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 DTNBO60941 627 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 STK3Q13188 491 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 LRRC2Q9BYS8 371 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 MYH7P12883 1935 aa11.37□□□□□ -0.59
TRIM55-201ENST00000276573 TM4SF1P30408 202 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 FGD1P98174 961 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 L1TD1Q5T7N2 865 aaKnown RBP11.36□□□□□ -0.59
TRIM55-201ENST00000276573 LARP1BQ659C4 914 aaKnown RBP11.36□□□□□ -0.59
TRIM55-201ENST00000276573 BRF1Q92994 677 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 STRBPQ96SI9 672 aaKnown RBP11.36□□□□□ -0.59
TRIM55-201ENST00000276573 MTMR6Q9Y217 621 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 C4BP0C0L5 1744 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 GOLGA6L3A6NEY3 463 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 WTIPA6NIX2 430 aaPredicted RBP11.36□□□□□ -0.59
TRIM55-201ENST00000276573 ZNF213O14771 459 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 PHF14O94880 888 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 F13A1P00488 732 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 ADRA2BP18089 450 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 HAND2P61296 217 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 KRT27Q7Z3Y8 459 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 FBXL16Q8N461 479 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 CCDC24Q8N4L8 307 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 GTF3C6Q969F1 213 aa11.36□□□□□ -0.59
TRIM55-201ENST00000276573 ZNF804BA4D1E1 1349 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 PFKFB2O60825 505 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 NCLP19338 710 aaKnown RBP11.35□□□□□ -0.59
TRIM55-201ENST00000276573 PDCP20941 246 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 NFIXQ14938 502 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 ALX1Q15699 326 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 MAGEB6Q8N7X4 407 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 GPT2Q8TD30 523 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 GNL3LQ9NVN8 582 aaKnown RBP11.35□□□□□ -0.59
TRIM55-201ENST00000276573 ATP6V1DQ9Y5K8 247 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 MYO5AQ9Y4I1 1855 aaKnown RBP11.35□□□□□ -0.59
TRIM55-201ENST00000276573 LAMA4Q16363 1823 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 COL24A1Q17RW2 1714 aa11.35□□□□□ -0.59
TRIM55-201ENST00000276573 TAF1P21675 1872 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 PATL2C9JE40 543 aaKnown RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 GYG1P46976 350 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 APOBRQ0VD83 1088 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 FOXD4L6Q3SYB3 417 aaPredicted RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 CAVIN4Q5BKX8 364 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 SLC27A3Q5K4L6 730 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 FOXD4L3Q6VB84 417 aaPredicted RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 AIDAQ96BJ3 306 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 ZNF274Q96GC6 653 aaPredicted RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 FAM84BQ96KN1 310 aaPredicted RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 ANKRD2Q9GZV1 360 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 APPP05067 770 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 SCRN1Q12765 414 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 CHST3Q7LGC8 479 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 FBXO33Q7Z6M2 555 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 USP48Q86UV5 1035 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 NCOA7Q8NI08 942 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 LLPHQ9BRT6 129 aaKnown RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 LRP2BPQ9P2M1 347 aa11.34□□□□□ -0.59
TRIM55-201ENST00000276573 ISY1Q9ULR0 285 aaKnown RBP11.34□□□□□ -0.59
TRIM55-201ENST00000276573 TRIM37O94972 964 aa11.33□□□□□ -0.6
TRIM55-201ENST00000276573 MCM5P33992 734 aa11.33□□□□□ -0.6
TRIM55-201ENST00000276573 EVCP57679 992 aa11.33□□□□□ -0.6
TRIM55-201ENST00000276573 MB21D2Q8IYB1 491 aaPredicted RBP11.33□□□□□ -0.6
TRIM55-201ENST00000276573 IQSEC3Q9UPP2 1182 aaPredicted RBP11.33□□□□□ -0.6
TRIM55-201ENST00000276573 CARMIL3Q8ND23 1372 aa11.33□□□□□ -0.6
TRIM55-201ENST00000276573 CASZ1Q86V15 1759 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 VPS37CA5D8V6 355 aaPredicted RBP11.32□□□□□ -0.6
TRIM55-201ENST00000276573 NPHP1O15259 732 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 MBD4O95243 580 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 MBD3O95983 291 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 PDIA3P30101 505 aaKnown RBP11.32□□□□□ -0.6
TRIM55-201ENST00000276573 CAVIN1Q6NZI2 390 aaKnown RBP11.32□□□□□ -0.6
TRIM55-201ENST00000276573 GAS2L3Q86XJ1 694 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 TMEM87AQ8NBN3 555 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 SMARCC2Q8TAQ2 1214 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 DENND2AQ9ULE3 1009 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 DOCK2Q92608 1830 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 C4AP0C0L4 1744 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 PRC1O43663 620 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 JAK2O60674 1132 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 VPS37DQ86XT2 251 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 IFNL3Q8IZI9 196 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 CHMP4CQ96CF2 233 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 NBPF3Q9H094 633 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 ARMT1Q9H993 441 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 GDPD2Q9HCC8 539 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 NSFL1CQ9UNZ2 370 aaKnown RBP11.32□□□□□ -0.6
TRIM55-201ENST00000276573 CNPY2Q9Y2B0 182 aa11.32□□□□□ -0.6
TRIM55-201ENST00000276573 ZMYM6O95789 1325 aa11.31□□□□□ -0.6
TRIM55-201ENST00000276573 PNPLA7Q6ZV29 1317 aa11.31□□□□□ -0.6
TRIM55-201ENST00000276573 WDR19Q8NEZ3 1342 aa11.31□□□□□ -0.6
TRIM55-201ENST00000276573 GSG1L2A8MUP6 293 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms