RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 TLDC1Q6P9B6 456 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 WAPLQ7Z5K2 1190 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 FERMT3Q86UX7 667 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 CDK19Q9BWU1 502 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 TAOK2Q9UL54 1235 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 ERLIN1O75477 346 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 TMPOP42166 694 aaKnown RBP10.57□□□□□ -0.72
PDGFC-201ENST00000274071 IRAK1P51617 712 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 CEP57Q86XR8 500 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 RPUSD2Q8IZ73 545 aaKnown RBP10.57□□□□□ -0.72
PDGFC-201ENST00000274071 SPDL1Q96EA4 605 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 TTC14Q96N46 770 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 TFIP11Q9UBB9 837 aaKnown RBP10.57□□□□□ -0.72
PDGFC-201ENST00000274071 USP32Q8NFA0 1604 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 GNG11P61952 73 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 CDCA2Q69YH5 1023 aaPredicted RBP10.57□□□□□ -0.72
PDGFC-201ENST00000274071 CADPS2Q86UW7 1296 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 CEP112Q8N8E3 955 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 C3orf20Q8ND61 904 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 SPDYE1Q8NFV5 336 aaPredicted RBP10.57□□□□□ -0.72
PDGFC-201ENST00000274071 BCAS4Q8TDM0 211 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 DHX58Q96C10 678 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 KAT14Q9H8E8 782 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 A0A1W2PP64 1363 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 TNRQ92752 1358 aa10.57□□□□□ -0.72
PDGFC-201ENST00000274071 ENO4A6NNW6 628 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 LARGE1O95461 756 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 PYGLP06737 847 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 RAB27AP51159 221 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 HDGFP51858 240 aaKnown RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 KCNB1Q14721 858 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 PDCD2Q16342 344 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 NFXL1Q6ZNB6 911 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 SAAL1Q96ER3 474 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 XPO4Q9C0E2 1151 aaKnown RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 EHD4Q9H223 541 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 RABEP2Q9H5N1 569 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 MAFGO15525 162 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 PDE1AP54750 535 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 CHMP4BP1P59074 171 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 STX1AQ16623 288 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 CEP85LQ5SZL2 805 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 MRPL50Q8N5N7 158 aaKnown RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 IGSF22Q8N9C0 903 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 PGBD1Q96JS3 809 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 SPATA32Q96LK8 384 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 ABCC4O15439 1325 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 IL16Q14005 1332 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 CDHR2Q9BYE9 1310 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 PPFIA2O75334 1257 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 SF3A1Q15459 793 aaKnown RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 CCDC83Q8IWF9 413 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 MSANTD4Q8NCY6 345 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 KIFC2Q96AC6 838 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 IRX2Q9BZI1 471 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 SCAND2PQ9GZW5 306 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-201ENST00000274071 OSBPL3Q9H4L5 887 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 NSD2O96028 1365 aa10.56□□□□□ -0.72
PDGFC-201ENST00000274071 ECEL1O95672 775 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 HSPA4P34932 840 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 PRPHP41219 470 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 NAP1L1P55209 391 aaKnown RBP10.55□□□□□ -0.72
PDGFC-201ENST00000274071 MYSM1Q5VVJ2 828 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 AOPEPQ8N6M6 819 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 LEO1Q8WVC0 666 aaPredicted RBP10.55□□□□□ -0.72
PDGFC-201ENST00000274071 NAT10Q9H0A0 1025 aaKnown RBP10.55□□□□□ -0.72
PDGFC-201ENST00000274071 SAMM50Q9Y512 469 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 FAM135BQ49AJ0 1406 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 WDHD1O75717 1129 aaPredicted RBP10.55□□□□□ -0.72
PDGFC-201ENST00000274071 RASSF9O75901 435 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 VSNL1P62760 191 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 SMARCC1Q92922 1105 aaPredicted RBP10.55□□□□□ -0.72
PDGFC-201ENST00000274071 LMCD1Q9NZU5 365 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 CABP1Q9NZU7 370 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 IFNKQ9P0W0 207 aa10.55□□□□□ -0.72
PDGFC-201ENST00000274071 SMTNP53814 917 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 TSHZ3Q63HK5 1081 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 RCSD1Q6JBY9 416 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 SRGAP1Q7Z6B7 1085 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 ANKRD44Q8N8A2 993 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 MAB21L3Q8N8X9 362 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 LMBR1Q8WVP7 490 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 CFAP53Q96M91 514 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 METP08581 1390 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 SETD1AO15047 1707 aaKnown RBP10.54□□□□□ -0.72
PDGFC-201ENST00000274071 RPSAP08865 295 aaKnown RBP10.54□□□□□ -0.72
PDGFC-201ENST00000274071 AARSP49588 968 aaKnown RBP eCLIP10.54□□□□□ -0.72
PDGFC-201ENST00000274071 SLC8A3P57103 927 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 THEMIS2Q5TEJ8 643 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 CDC37L1Q7L3B6 337 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 PLEKHF1Q96S99 279 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 CRACR2AQ9BSW2 395 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 GGNBP2Q9H3C7 697 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 CENPHQ9H3R5 247 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 CHCHD3Q9NX63 227 aaKnown RBP10.54□□□□□ -0.72
PDGFC-201ENST00000274071 PUF60Q9UHX1 559 aaKnown RBP10.54□□□□□ -0.72
PDGFC-201ENST00000274071 PTCH1Q13635 1447 aa10.54□□□□□ -0.72
PDGFC-201ENST00000274071 POTEB2H3BUK9 544 aa10.53□□□□□ -0.72
PDGFC-201ENST00000274071 ZSCAN12O43309 604 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms